| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0562 |
|---|
| Symbol | hemC |
|---|
| ID | 4031310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 622408 |
|---|
| End bp | 623358 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637969092 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_575912 |
|---|
| Protein GI | 92116183 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.264968 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAATCCT CCGGTGAGAC AGACATTCTG GCAACGATAG GCACCCGGGG CAGCGCGCTG
GCGCTGGCGC AGGCCAATGA GGTGCGGGAC CGACTGGCGC GGGCGCATCA GGTGGCGCCC
GAGCGGATCG TCATCAAGAC CATCCGGACC TCGGGCGATG CCATTCAGGA CCGGCCGCTG
TTCGATGTCG GCGGCAAGGG ACTTTTTACC AAGGAGATCG AGGAAGCCCT GCTGGCCGGC
AGCATCGACT TCGCGGTGCA TTCGTCCAAG GACGTGCCGA CGTTTCTGCC TGATGCCACC
TGGCTGCCGG CGTTTCTGCC GCGCGAGGAC GTGCGCGACG CCTTCATCAG TCCGCGCGCC
GCGTCATTGA ACGATCTGCC GGCAGGCTCG ATCGTCGGGA CCGCGTCGCT GCGGCGGCAG
GCCATGGTGC TGCGGCTGCG CCCGGATCTG AAGGTGAGCG TCATCCGCGG CAATGTCGAG
ACGCGCTTGC GCAAGCTCGT GGCGGGGGAG GCCGACGCCA CGCTGCTGGC GCTGGCCGGC
CTGAACCGCC TCGGCTTGCA GGACAGGGCG ACGCGCATTC TCGAGACCGA CGAATTCCTG
CCGGCGGTCG GGCAGGGCGC CATCGCGATC GAATCGCGCC GTGATGACGA CCGCATCAAC
GCGTTCGTGA AGGCGATCGG CGATTCTGAA ACGGAAGTGG CACTGAGCGC CGAGCGGAGC
TTTCTGGCGC TGCTTGACGG CTCCTGTCGC ACGCCGATCG GCGGTCATTG TCGCGTCAAC
GGCGACCGCA TTCATTTCCG CGGCCTCATC ATTTCTCCCG ACGGCACGCA GTCCTACGAG
ACCACGCGCG AAGGCGCGCG CGCGGATGCC GCCGCGCTTG GTGCGGACGC GGCGCGTGAA
CTGCGCGAGC GCGCCGGCGA GAAATTCTTC ACGCTGTTTG CCGGAGCCTG A
|
|---|
| Protein sequence | MQSSGETDIL ATIGTRGSAL ALAQANEVRD RLARAHQVAP ERIVIKTIRT SGDAIQDRPL
FDVGGKGLFT KEIEEALLAG SIDFAVHSSK DVPTFLPDAT WLPAFLPRED VRDAFISPRA
ASLNDLPAGS IVGTASLRRQ AMVLRLRPDL KVSVIRGNVE TRLRKLVAGE ADATLLALAG
LNRLGLQDRA TRILETDEFL PAVGQGAIAI ESRRDDDRIN AFVKAIGDSE TEVALSAERS
FLALLDGSCR TPIGGHCRVN GDRIHFRGLI ISPDGTQSYE TTREGARADA AALGADAARE
LRERAGEKFF TLFAGA
|
|---|
| |