Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_0507 |
Symbol | |
ID | 4029935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | + |
Start bp | 561346 |
End bp | 562125 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637969035 |
Product | CarD family transcriptional regulator |
Protein accession | YP_575857 |
Protein GI | 92116128 |
COG category | [K] Transcription |
COG ID | [COG1329] Transcriptional regulators, similar to M. xanthus CarD |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0122387 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCAAGCA AGACTGCCAG AATTCCCGCC AAAGCCACTG CTTCGAAGAC CGCCGCTTCG AAGACCGCTG CTGCCTCGAA GGCAGGTTCC AGAACCGCGA CCAGGCCGGC TGCAAAACCC GCATCGAAAA CTGCGGTGGC CGGCAAGTCT GCCGTCAAGG CTGGCGCGCC CCGTGTCGAT GAACCGAAGA AGGTTCTGAC CCAGCGCCAG GGGTTCAGGA CCAACGAGTT CGTGGTCTAT CCGGCGCATG GCGTCGGTCA GATTCTGGCG ATCGAAGAAC AGGAGATCGC GGGCGCCAGG CTCGAACTGT TCGTCATCAA TTTCATGAAG GACAAGATGA CCCTGCGGGT GCCGACTGCG AAGATCGCGA ATGTCGGCAT GCGCAAGCTG TCGGAGCCGG GGTTGGTCAA GCGGGCGCTC GAAACGTTGA AGGGCCGTGC GCGCATCAAG CGCACCATGT GGTCGCGGCG TGCGCAGGAA TATGAAGCCA AGATCAATTC GGGGGACATC GTTGCGATCG CCGAAGTGGT CCGCGATCTC TATCGCTCGG AATCGCAGCC GGAGCAATCC TACAGCGAAC GTCAGCTCTA CGAAGCCGCG CTCGATCGCC TGTCGCGCGA GATCGCCGTC GTCCAGCACG TGACGGAAAC CGAGGCGGTC AAGGAAATCG AAGGGCAGCT CGCCAAGAGC CCGCGCCGCG GCGCCAAGGC GGAGTCGGAC GCCGAGACCG ATGCCGACGC CGATGGCGAC GACGCGACGG TGGCCGATGA AGCTGCGTAG
|
Protein sequence | MPSKTARIPA KATASKTAAS KTAAASKAGS RTATRPAAKP ASKTAVAGKS AVKAGAPRVD EPKKVLTQRQ GFRTNEFVVY PAHGVGQILA IEEQEIAGAR LELFVINFMK DKMTLRVPTA KIANVGMRKL SEPGLVKRAL ETLKGRARIK RTMWSRRAQE YEAKINSGDI VAIAEVVRDL YRSESQPEQS YSERQLYEAA LDRLSREIAV VQHVTETEAV KEIEGQLAKS PRRGAKAESD AETDADADGD DATVADEAA
|
| |