Gene Nham_0490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0490 
Symbol 
ID4029862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand+ 
Start bp541674 
End bp542348 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content66% 
IMG OID637969018 
Productshikimate kinase 
Protein accessionYP_575840 
Protein GI92116111 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACGTCAG AGACCGTTTC ACCGGCCGGT GCCGGCACAC CCACGGAGGC CGCGATCGTC 
GCGGCGCTCG GCGGGCGTTC GCTGGTGCTT GTCGGCATGA TGGGGGCCGG AAAGTCCACG 
ATCGGGCGGC GTCTGGCGAC GCGTCTGGCG ATGCGGTTCG TCGACGCCGA TGCCGAGATC 
GAACGCGCTG CCGGAATGTC GATTCCCGAA ATTTTCGAAA CTCACGGCGA GCCGCATTTC 
CGCGACGGCG AAGCGCGGGT GATCGCGCGG CTGTTGAGCG GCGGTCCGTT GGTGCTCGCG 
ACCGGCGGCG GTGCCGTGCT GCGCGAGGAG ACCCGCGCGC GCATCCGCGA GCGGGCGATC 
TCGATCTGGC TCAAGGCGGA CGCCGAGGTG ATCCTGCGCC GGGTTAGGCG CCGCGCCGAT 
CGGCCGCTGC TGCAAACGGC TGATCCCGCC GCGACGATCG GGCGTCTTAT CGCCGAGCGC 
GAGCCCGTCT ATCAACTGGC GGATATCATG GTTGTCTCGT GTGACGTGCC GTATGAAAGA 
ATCGTCGATG AATGCATCGA CCTGCTTCAC GGCAGGCTTT GTCGCGGCGG AACCACGGAG 
CTGAAACCGC CAGGGGCTCG CGACGAACGA CCTGACGAAG GATTTGACAC CAAAGGATTT 
GGCACCACGC GATGA
 
Protein sequence
MTSETVSPAG AGTPTEAAIV AALGGRSLVL VGMMGAGKST IGRRLATRLA MRFVDADAEI 
ERAAGMSIPE IFETHGEPHF RDGEARVIAR LLSGGPLVLA TGGGAVLREE TRARIRERAI 
SIWLKADAEV ILRRVRRRAD RPLLQTADPA ATIGRLIAER EPVYQLADIM VVSCDVPYER 
IVDECIDLLH GRLCRGGTTE LKPPGARDER PDEGFDTKGF GTTR