| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0448 |
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| Symbol | ligD |
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| ID | 4030083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007964 |
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| Strand | - |
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| Start bp | 493562 |
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| End bp | 496162 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637968976 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_575798 |
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| Protein GI | 92116069 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGACG CCACCCGGCT GCATTACGAC TTCCGTCTCG AATATGACGG GGTGTTCAAG
TCCTGGGCGG TGACGCGCGG CCCCTCGCTC GATCCAGCCG AGAAGCGGCT GGCGGTGGAG
GTCGAGGATC ACCCGCTCGA CTACGGCGAC TTCGAGGGTA CCATCCCGAA AGGCCAGTAT
GGCGGCGGCA CCGTGGAGAT CTGGGACCGC GGCTATTGGT ATGCCGACGA TCCGGCGAAG
GGTCTCGCCA AGGGCGACCT CAAATTCGCG CTGATGGGCG AGAAGCTCAA AGGCGAATGG
GTACTGGTGC GCATGAAGCA CGATCGCAGC GGCGGCAAGC GCACCAACTG GCTGCTGATC
AAGCACCGCG ACGACTATGC CAAACCCGGC ACGGGCGAGG AGGTACTGAA GCACGACCGC
TCGGTTGCGT CGGGGCGAAC GCTCAGACAG ATCGCGGAGG GCAAGGGCAA GGCACCGGAG
CCATTCATGA TGACCAGACG GATCGCCGGT TCGGATGCGG TGTGGGATTC AAACAAGGGC
GTTGCTGCCA AGGCGCGCGA CAGGAACTCG AAACATTCAG CGGTAAAGAC GAGTGCCAAA
CCTGCTTCAG CCCGCAAGCG ATTACCAACG AAGGCGAAGG CCAACGCGAT CAAGAGCGAG
ATGCCGGACT TCGCCGGGCT TCAACTCTGC AAGACGTCGA CGCGCCCGCC GTCGGCGGAC
GGCTGGGTGC ATGAGATCAA ATTCGACGGC TACCGCATCC AGATGCGGAT CGAGAACGGT
GACGTGACGC TCAAAACTCG CAAGGGCCTC GACTGGACCG ACAAGTTTCC GGCCATCGCA
AGCGCGGCTA CGAAATTGCC CGACGCCATC ATCGACGGCG AGATCGTTGC ATTGAACCAA
CATGGCGATC CGGACTTCTC GGCCATGCAG GCCGCGCTGT CCGAAGACAA GACCGACGAA
CTGGTGTTCT TTGCCTTCGA CCTGCTGTTC GCCGAGGGTG AGGATTTGCG CCCGCTGTCG
CTGCTCGCGC GCAAGGAACG GCTTCGTCAA TTGCTGGGAC GTTCTGCAAA ATCAGCCCGT
GCGTCGATCC GCTACGTCGA ACATTTCGAT GCCGATGGCG CGCAGGTCCT GGACACCGCG
CGTGAGGCGG GACTTGAGGG CATCATCTCA AAACGGGCCG ACGAGCCCTA TCGCGCCGGC
CGCGGCGGAA GCTGGCTCAA GAGCAAAAGC CGCGCCGGCC ATGAGGTGGT GATCGGCGGC
TGGAAGACGA CAAGCGGAAA ATTCCGCTCG CTGATGGCCG GCGTCTACAA CGGCGACTAC
CTTGTCTATA CTGGAATCGT CGGCACCGGC TACGGCCGCG ACACTGTCAA GCGCATCATG
CCGGCGCTGA AGGCGGCTGC CGCCTCGAAG AGTCCATTCT CCGGCAACAA CGCACCGCCG
GGCGGTCCCG AGGTGCATTG GCTGAAGCCT GAACTCGTTG CCGAGATCGA ATTCGCCGGC
TGGACCGCCG ACGGCATGGT TCGGCAGGCG GCCTTCAAGG GATTGCGCGC AGACAAGCCG
GCCCGCGAGG TCAAGGCGGA GGCGCCGTCC CATGCGACGG TCCCAAGGCT CAACGCGACA
AGGCTCGCCG CGAGCGCTGC GGCCGCAGCG CGCGCTGATA CGACGACATC GCGCCAGCCG
CGCGCACCTG CGGCGCGGGA TCGCTCGACG GTCATGGGCG TTGCGATCTC GCACCCGGAC
AAGGCGCTGT GGCCGGATGC CGGCGACAAG CAGCCGGTCA CCAAGCGCGA CCTTGCCGCG
TACATGGAAA CGGCCGGCGA CTGGATCATC CAGCACATCC GCGGGCGGCC GTGTTCGATC
GTGCGCGCTC CCGACGGCAT CGGCGGCGAG ACCTTCTTCC AGCGTCACGC CATGCCGGGC
CTGTCCGATC TCGTCACCGA AGTGAAGGTG TCCGGCGACC GGAAGCCTTA TCTGCAGATC
GACCGCGTCG AAGGCCTGAT CGCGGTGGCG CAGATCGGCG GGCTCGAACT GCATCCGTGG
AATTGCGCGC CCGATCAATA TGACGTGCCG GGGCGGCTGG TGTTCGACCT CGATCCGGCG
CCGGACGTCG CATTCCCGGA TGTGATCGCG GCTGCCAAGG AGATGAAGCA ACGCCTCGAG
ACGCTCGGGC TTGAAACCTT CTGCAAGACC ACCGGCGGCA AGGGCCTGCA TGTGGTCACG
CCGCTTGCAA TCACGCAGAA GAACAGGTTG AACTGGAAGC AAGCCAAAAT GTTCGCGCAG
GCCGTCTGCG AACAAATGGC AACCGATACA CCCGATAAAT ATCTCATCAC CATGTCGAAG
AAGCAGCGCG AGGGCAAAAT CTTTCTCGAT TATCTTCGCA ACGACACCAA ATCGACCGCG
GTCGCGCCTC TGTCGCCGCG CGCGCGCCCT GGCGCCACCG TGTCGATGCC GCTGAACTGG
TCGCAGGTGA AAGCCGGCCT CGATCCGAAA CGCTTCACGC TCCGCACCGC GCCGGACCTC
CTGAAAAAGA GCAAGGCCTG GTCGGGCTAC GACGAGGCCG CGCGTCCGCT GGCCGCTGCG
ATCGGAAAGC TGGTCCGATG A
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| Protein sequence | MHDATRLHYD FRLEYDGVFK SWAVTRGPSL DPAEKRLAVE VEDHPLDYGD FEGTIPKGQY
GGGTVEIWDR GYWYADDPAK GLAKGDLKFA LMGEKLKGEW VLVRMKHDRS GGKRTNWLLI
KHRDDYAKPG TGEEVLKHDR SVASGRTLRQ IAEGKGKAPE PFMMTRRIAG SDAVWDSNKG
VAAKARDRNS KHSAVKTSAK PASARKRLPT KAKANAIKSE MPDFAGLQLC KTSTRPPSAD
GWVHEIKFDG YRIQMRIENG DVTLKTRKGL DWTDKFPAIA SAATKLPDAI IDGEIVALNQ
HGDPDFSAMQ AALSEDKTDE LVFFAFDLLF AEGEDLRPLS LLARKERLRQ LLGRSAKSAR
ASIRYVEHFD ADGAQVLDTA REAGLEGIIS KRADEPYRAG RGGSWLKSKS RAGHEVVIGG
WKTTSGKFRS LMAGVYNGDY LVYTGIVGTG YGRDTVKRIM PALKAAAASK SPFSGNNAPP
GGPEVHWLKP ELVAEIEFAG WTADGMVRQA AFKGLRADKP AREVKAEAPS HATVPRLNAT
RLAASAAAAA RADTTTSRQP RAPAARDRST VMGVAISHPD KALWPDAGDK QPVTKRDLAA
YMETAGDWII QHIRGRPCSI VRAPDGIGGE TFFQRHAMPG LSDLVTEVKV SGDRKPYLQI
DRVEGLIAVA QIGGLELHPW NCAPDQYDVP GRLVFDLDPA PDVAFPDVIA AAKEMKQRLE
TLGLETFCKT TGGKGLHVVT PLAITQKNRL NWKQAKMFAQ AVCEQMATDT PDKYLITMSK
KQREGKIFLD YLRNDTKSTA VAPLSPRARP GATVSMPLNW SQVKAGLDPK RFTLRTAPDL
LKKSKAWSGY DEAARPLAAA IGKLVR
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