Gene Nham_0397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0397 
Symbol 
ID4030206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand+ 
Start bp438471 
End bp439085 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content63% 
IMG OID637968926 
ProductTadE-like 
Protein accessionYP_575748 
Protein GI92116019 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4961] Flp pilus assembly protein TadG 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.561765 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCAGTA TCTGGTCATG CATCAGGGTT TCGGCGGCAG CGATGCGGCG TGATTCGCGG 
GGCGTTGCCG CGATCGAATT TGCGATGATC GTGCCGCTGA TGCTGGTGAT GCTGTTCGGG 
ACCATCGATG TGTCGTCGGG CGTGGCGGTC AAGCGCAAGG TCACGCTGGT CGCGAGGACG 
CTGTCCGACC TGACGTCGCA GTCCAAGGTG GTGGGCGACG CGGACATCAC GAACTTCTTG 
GCTGCCAGCT ATGGCATCAT GTGGCCCTAT CCGTCGGCGC CGGTCCAGGC CACCATTTCG 
GAACTCTACA TCGATCCGGC GACGTCTGTG GCGCGGGTGC AGTGGAGCCA GGGATCGTCG 
CCGCGAGGCG TGGGCTCGAC AGTCAGCATT TCGTCGGACC TCATCGGCAA GGATTCGTCG 
GACAAGACGC TTCCCGGTCA GTACCTGATC TACAGCGAGG TCAGCTATCT CTACCAGCCG 
ATCGTCGGCT ACGTGATGGC GAAAGCCGGC GTGACGCTGA GCGACACCGC CTATACGCGG 
CCGCGTCAGT CCATGTGCGT CACCTATCCC ACGCCGCCTG CCGGCACCCC TTTTCCTCCT 
TGCCCGACGA ATTGA
 
Protein sequence
MSSIWSCIRV SAAAMRRDSR GVAAIEFAMI VPLMLVMLFG TIDVSSGVAV KRKVTLVART 
LSDLTSQSKV VGDADITNFL AASYGIMWPY PSAPVQATIS ELYIDPATSV ARVQWSQGSS 
PRGVGSTVSI SSDLIGKDSS DKTLPGQYLI YSEVSYLYQP IVGYVMAKAG VTLSDTAYTR 
PRQSMCVTYP TPPAGTPFPP CPTN