Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_0388 |
Symbol | |
ID | 4030197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 429849 |
End bp | 431318 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637968917 |
Product | type II secretion system protein E |
Protein accession | YP_575739 |
Protein GI | 92116010 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTTGGCA AGCGTAGCGG ACCAGAGGAC GACGCCCGGA AGATGGCGGG CCTGACGCTG GAGGCCACTC CGGCCATCCA GAATGTGCGA GCGCCCGCGG AGATCGCTTC GCCGACCGTC GCCTCACCGC CGCTCGCCCC GGCGCGCTCC GCGCCGCACA CACCGGCCAT CGATGCCCGC CGGTCCGAAA CCTATTATCA GGTCAAGGCG ACGATTTTCG GCGCGCTGAT CGAGGCCATC GATCTCGCCC AGCTCGCCAA ACTCGACGGT GAATCCGCAC GCGAGGAAAT CCGCGATATC GTCAACGAGA TCATCGCGAT CAAGAACATC GTGATGTCGA TCGCCGAGCA GGAAGAGCTG CTTGACGACA TCTGCAACGA CGTTCTCGGC TACGGTCCGC TCGAGCCGCT GCTGTCTCGC GACGACATCG CGGACATCAT GGTCAACGGC GCCGGCACGG TCTTCATCGA AGTCGCCGGC AAGATCCAGC GGACCGGAAT CCGGTTCCGC GACAACCAGC AACTGCTGAA CATCTGCCAG CGGATCGTCA GCCAGGTCGG CCGCAGGGTC GATGAATCCT CGCCTATATG CGATGCGCGT CTAGCCGACG GATCCCGCGT CAACGCCATC GTTCCGCCGC TGGCGATCGA CGGACCCGCG CTGACAATCC GAAAATTCAG GAAGGACAAG CTGACCCTCG ATCAGCTGGT GAAATTCGGC GCCATAACGC CGGAAGGCGG CACGATCCTC CAGATCATCG GACGGTGCCG CGCCAATGTG CTGATCTCTG GCGGCACCGG CTCCGGCAAA ACCACACTAC TGAATTGCCT CACGAACTAT ATCGACCACG ACGAGCGTAT CATCACCTGC GAAGACGCCG CCGAGCTTCA GTTACAGCAG CCGCACGTGG TGCGCCTAGA AACCCGGCCG CCCAACATCG AGGGCGAGGG CCAGGTCTCG ATGCGCGAAC TGGTCCGAAA CTGCCTTCGT ATGCGCCCGG AGCGCATCAT CGTCGGCGAG GTTCGCGGAC CCGAGGCCTT CGACCTGCTG CAGGCCATGA ACACCGGCCA TGACGGTTCG ATGGGCACGC TGCACGCCAA TAACCCCCGC GAGGCGCTGT CGCGCTGCGA GTCGATGATC ACGATGGGGG GCTTCGCGCT GCCCTCGCGC ACCATCCGCG AGATGATCTG CGCCTCGATC GACATCATCA TCCAGGCTGC CCGCCTTCGC GACGGCTCGC GGCGTATCAC TCACATCACC GAAGTGATGG GGATGGAAGG CGACACCATC ATCACCCAGG ATATCTTCAT CTACGATCTT CTTGGCGAGG ACGCCAACGG GAACGTGGTC GGCCGACACC GTTCGACCGG AATCGGCCGG CCGCGGTTCT GGGAGCGCGC CCGGTACTAT AACGAGGAGA AGCGGCTCGC AGCGGCGCTC GATGCGGCGG AAGTCAAGGT CGAAATCTGA
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Protein sequence | MFGKRSGPED DARKMAGLTL EATPAIQNVR APAEIASPTV ASPPLAPARS APHTPAIDAR RSETYYQVKA TIFGALIEAI DLAQLAKLDG ESAREEIRDI VNEIIAIKNI VMSIAEQEEL LDDICNDVLG YGPLEPLLSR DDIADIMVNG AGTVFIEVAG KIQRTGIRFR DNQQLLNICQ RIVSQVGRRV DESSPICDAR LADGSRVNAI VPPLAIDGPA LTIRKFRKDK LTLDQLVKFG AITPEGGTIL QIIGRCRANV LISGGTGSGK TTLLNCLTNY IDHDERIITC EDAAELQLQQ PHVVRLETRP PNIEGEGQVS MRELVRNCLR MRPERIIVGE VRGPEAFDLL QAMNTGHDGS MGTLHANNPR EALSRCESMI TMGGFALPSR TIREMICASI DIIIQAARLR DGSRRITHIT EVMGMEGDTI ITQDIFIYDL LGEDANGNVV GRHRSTGIGR PRFWERARYY NEEKRLAAAL DAAEVKVEI
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