Gene Nham_0388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0388 
Symbol 
ID4030197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp429849 
End bp431318 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content63% 
IMG OID637968917 
Producttype II secretion system protein E 
Protein accessionYP_575739 
Protein GI92116010 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTGGCA AGCGTAGCGG ACCAGAGGAC GACGCCCGGA AGATGGCGGG CCTGACGCTG 
GAGGCCACTC CGGCCATCCA GAATGTGCGA GCGCCCGCGG AGATCGCTTC GCCGACCGTC
GCCTCACCGC CGCTCGCCCC GGCGCGCTCC GCGCCGCACA CACCGGCCAT CGATGCCCGC
CGGTCCGAAA CCTATTATCA GGTCAAGGCG ACGATTTTCG GCGCGCTGAT CGAGGCCATC
GATCTCGCCC AGCTCGCCAA ACTCGACGGT GAATCCGCAC GCGAGGAAAT CCGCGATATC
GTCAACGAGA TCATCGCGAT CAAGAACATC GTGATGTCGA TCGCCGAGCA GGAAGAGCTG
CTTGACGACA TCTGCAACGA CGTTCTCGGC TACGGTCCGC TCGAGCCGCT GCTGTCTCGC
GACGACATCG CGGACATCAT GGTCAACGGC GCCGGCACGG TCTTCATCGA AGTCGCCGGC
AAGATCCAGC GGACCGGAAT CCGGTTCCGC GACAACCAGC AACTGCTGAA CATCTGCCAG
CGGATCGTCA GCCAGGTCGG CCGCAGGGTC GATGAATCCT CGCCTATATG CGATGCGCGT
CTAGCCGACG GATCCCGCGT CAACGCCATC GTTCCGCCGC TGGCGATCGA CGGACCCGCG
CTGACAATCC GAAAATTCAG GAAGGACAAG CTGACCCTCG ATCAGCTGGT GAAATTCGGC
GCCATAACGC CGGAAGGCGG CACGATCCTC CAGATCATCG GACGGTGCCG CGCCAATGTG
CTGATCTCTG GCGGCACCGG CTCCGGCAAA ACCACACTAC TGAATTGCCT CACGAACTAT
ATCGACCACG ACGAGCGTAT CATCACCTGC GAAGACGCCG CCGAGCTTCA GTTACAGCAG
CCGCACGTGG TGCGCCTAGA AACCCGGCCG CCCAACATCG AGGGCGAGGG CCAGGTCTCG
ATGCGCGAAC TGGTCCGAAA CTGCCTTCGT ATGCGCCCGG AGCGCATCAT CGTCGGCGAG
GTTCGCGGAC CCGAGGCCTT CGACCTGCTG CAGGCCATGA ACACCGGCCA TGACGGTTCG
ATGGGCACGC TGCACGCCAA TAACCCCCGC GAGGCGCTGT CGCGCTGCGA GTCGATGATC
ACGATGGGGG GCTTCGCGCT GCCCTCGCGC ACCATCCGCG AGATGATCTG CGCCTCGATC
GACATCATCA TCCAGGCTGC CCGCCTTCGC GACGGCTCGC GGCGTATCAC TCACATCACC
GAAGTGATGG GGATGGAAGG CGACACCATC ATCACCCAGG ATATCTTCAT CTACGATCTT
CTTGGCGAGG ACGCCAACGG GAACGTGGTC GGCCGACACC GTTCGACCGG AATCGGCCGG
CCGCGGTTCT GGGAGCGCGC CCGGTACTAT AACGAGGAGA AGCGGCTCGC AGCGGCGCTC
GATGCGGCGG AAGTCAAGGT CGAAATCTGA
 
Protein sequence
MFGKRSGPED DARKMAGLTL EATPAIQNVR APAEIASPTV ASPPLAPARS APHTPAIDAR 
RSETYYQVKA TIFGALIEAI DLAQLAKLDG ESAREEIRDI VNEIIAIKNI VMSIAEQEEL
LDDICNDVLG YGPLEPLLSR DDIADIMVNG AGTVFIEVAG KIQRTGIRFR DNQQLLNICQ
RIVSQVGRRV DESSPICDAR LADGSRVNAI VPPLAIDGPA LTIRKFRKDK LTLDQLVKFG
AITPEGGTIL QIIGRCRANV LISGGTGSGK TTLLNCLTNY IDHDERIITC EDAAELQLQQ
PHVVRLETRP PNIEGEGQVS MRELVRNCLR MRPERIIVGE VRGPEAFDLL QAMNTGHDGS
MGTLHANNPR EALSRCESMI TMGGFALPSR TIREMICASI DIIIQAARLR DGSRRITHIT
EVMGMEGDTI ITQDIFIYDL LGEDANGNVV GRHRSTGIGR PRFWERARYY NEEKRLAAAL
DAAEVKVEI