Gene Nham_0379 details

Gene Information

• Locus tag: Nham_0379
• ID: 4030188
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 418786
• End bp: 420672
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637968908
• Product: extracellular solute-binding protein
• Protein accession: YP_575730
• Protein GI: 92116001
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4166] ABC-type oligopeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGGCAGC CCAGCCGCCG GCAGGTGATC GGTCTTGGTG TCGGTGCGGC GAGCGCGGCC 
TGGTTCCTGC CGGCTATCGC TGCGCCCGCG GCCGGTGCGG AGACCGAATC CCAAGGTGAA 
TCTCATGGCA TGTCGGCGTT TGGCGACCTG AAATATCCGG CCGATTTCCA TCACTTCGAT 
TACGTCAATG CCGATGCACC GAAGGGCGGA CTGTTTTCGA CCATTCCGTC GAGCCGTGCT 
TTCAATCAAT CGTTCCAGAC CTTCAACTCG CTCAACGCCT TCATCCTGAA GGGTGATGGT 
GCACAGGGCA TGGGGATGAC GTTCACGTCG CTGATGGCGC GGGCCGGCGA CGAGCCCGAT 
GCGATGTACG GCCTGGCCGC GAAGTCGGTG CGCATCTCGG CCGACGGACT GACCTACCGT 
TTCGCGATGC GGCCGGAGGC CCGGTTTCAT GATGGGCAGA AACTCACCGC GCGCGATGCC 
GCCTTCTCTC TGATGGTCTT GAAGACCAAG GGGCATCCCC TGATCACGCA GCAGATGCGC 
GACATGGTGA AGGCGGAAGC ACCCGACGAC ACGACGCTGA TCGTCACCTT CGCGCCGAAG 
CGCGGACGCG ACGTGCCGCC GTTTGTCGCG GGCCTGCCGA TCTTTTCGCA AGCCTATTAC 
ACCGCGCATC CGTTCGAGGA ATCCACGCTC GACGTTCCGC TCGGCAGCGG GCCGTACAAG 
GTCGGCCGGT TCGAGTCGAA CCGTTTCATC GAGTTCGACC GGGTCAAGGA CTGGTGGGGC 
GCCGATCTTC CGGTCAATCG CGGAAGTTAC AATTTCGATA CGGTGCGGTT CGATTTCTAC 
CGCGACCGCG ATGTGGCGTT CGAGGGCTTT ACCGGTCGTA GCTACCTGTA CCGGGAGGAA 
TTCACCTCCC GCATCTGGAA TACGCGCTAC GATTTCCCGG CGATGACCGA GGGCCGCGTC 
AAGCGCGAGC AGTTGCCCGA CGAGACGCCG TCCGGCGCGC AAGGCTGGTT CATCAATACC 
CGCCGCGACA AGTTCAAGGA CCCCCGCGTT CGCGAGGCGC TCGACTGCGC CTTCGATTTC 
GAGTGGACCA ACAAGAGCAT CATGTACGGC GCCTACGTGC GGACGGTGTC GCCGTTCCAG 
AATTCCGACC TGATGGCGAG CGGCCTGCCG TCGCCGGAGG AAGCGGCGTT GCTGGAGCCG 
TTCCGCGGCA AGGTGCCGGA CGAGGTGTTC GGCATGCCGT TCGTGCCGCC GGTGTCCGAC 
GGCTCGGGAC AGGACCGCAA GCTGTTGCGT AAGGCGGCAC AACTGCTCAA CGATGCGGGT 
TTTCACATCA AGGACGGCAA GCGGATGACC CCGCGGGGCG AGGTCTTCCG CGTAGAGTTC 
CTGCTCGATG AGCCGGCGTT CCAGGCCCAT CATATGCCGT ATATAAAGAA CCTCGGAACG 
CTCGGTATCG AGGCGACGCT GCGGCTGGTC GATCCCGTGC AGGCGAGGGC GCGGCGTGAT 
GACTTCGATT TCGACATGAT GATCGAACGT TTCGGCTTCT CGACCGTTCC GGGTGACTCG 
CTGCGGCCGT TCTTTTCGTC GCGGGCAGCA AGAACCAAGG GATCGAACAA CCTCGCCGGC 
ATTTCGGATC CTGAGGTCGA TTCTCTGATG GAACAGGTGA TCGCGGCCGA TACCCGCGCC 
AGGCTCGTAT TCGCCGCTCG CGCGCTGGAT CGCGTCATTC GCGCCGGCCG TTACTGGGTG 
CCGCAATGGT ATTCGAACGC GCACCGGCTG GCCTATTGGG ATCTGTTCGG GCATCCGCCG 
AACCTCCCAA AATATCTCGG CGTGATGGCT CCTGACATCT GGTGGTCGTC GCCGGCCAAA 
CCGGCGTCGT CTGGGCAGGC GAAATAG 

 

Protein sequence

MRQPSRRQVI GLGVGAASAA WFLPAIAAPA AGAETESQGE SHGMSAFGDL KYPADFHHFD 
YVNADAPKGG LFSTIPSSRA FNQSFQTFNS LNAFILKGDG AQGMGMTFTS LMARAGDEPD 
AMYGLAAKSV RISADGLTYR FAMRPEARFH DGQKLTARDA AFSLMVLKTK GHPLITQQMR 
DMVKAEAPDD TTLIVTFAPK RGRDVPPFVA GLPIFSQAYY TAHPFEESTL DVPLGSGPYK 
VGRFESNRFI EFDRVKDWWG ADLPVNRGSY NFDTVRFDFY RDRDVAFEGF TGRSYLYREE 
FTSRIWNTRY DFPAMTEGRV KREQLPDETP SGAQGWFINT RRDKFKDPRV REALDCAFDF 
EWTNKSIMYG AYVRTVSPFQ NSDLMASGLP SPEEAALLEP FRGKVPDEVF GMPFVPPVSD 
GSGQDRKLLR KAAQLLNDAG FHIKDGKRMT PRGEVFRVEF LLDEPAFQAH HMPYIKNLGT 
LGIEATLRLV DPVQARARRD DFDFDMMIER FGFSTVPGDS LRPFFSSRAA RTKGSNNLAG 
ISDPEVDSLM EQVIAADTRA RLVFAARALD RVIRAGRYWV PQWYSNAHRL AYWDLFGHPP 
NLPKYLGVMA PDIWWSSPAK PASSGQAK