| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0257 |
|---|
| Symbol | |
|---|
| ID | 4031005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 287696 |
|---|
| End bp | 288682 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637968793 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_575617 |
|---|
| Protein GI | 92115888 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.430018 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGCG CTCGCCGCGC CGCGTACCTC AACAAAGTGA GTTGTGTCTT GCCGGTAGTC
GATCAAAACG CCATTGAGCT GCCGCCCCGG ATATCGGAGG CGAGCGTCGC CGATTACTTC
GCGCTGCTGA AGCCACGGGT GATGTCGCTC GTGATCTTCA CCGCGCTGGT CGGACTGATG
ATTGCGCCGG GCCATGTACA CCCGGTGCTG GGCTTCACCG CGATCCTGTG CATCGCGGTC
GGCGCCGGTG CCTCCGGCGC GCTGAACATG GCGCTCGAAG GCGATATCGA CGTGCTGATG
TCGCGCACGG CCAACCGGCC GATCCCGCGC GGCCGCATCA CCCGCGGCGA GGCGATGGGG
TTCGGCCTCA CGCTGTCGTT CTTCTCGGTG ATGACGCTCG GCGCCCTGGT CAACTGGTAC
GCCGGGGGAT TGCTGGCCTT TACGATCTTT TTCTACGTGG TGATCTACAC CATGGGGCTG
AAGCGCCGGA CCGCGCAGAA CATCGTGATC GGCGGCGCCG CCGGCGCACT GCCGCCGGTG
GTGGCGTGGG CGGCGGCGAC GGGGTCGCTG TCGGTCGAGC CGCTGCTGCT GTTTTTGATC
ATCTTCTTCT GGACGCCGCC GCATTTCTGG GCGCTGGCGC TGTTCCGCTC CGACGATTAT
GCGCGCGCCG GCGTGCCGAT GCTGCCGGTG GTCGCCGGCC CCGATGCGAC GCGGCTGCAG
ATCCTGCTCT ATACCATCGT GCTGGTGGCG ATCGCCGCCG CGCCCTGGCC GCTCGGCTAT
TTCGACTGGG TTTATGGCGT CACCTCGCTG GTTCTCGGCG CCGGCATGCT GGTGCTCGCG
ATCAATGTCT ATCGCCATCG CACCGGCAGC ACGGCGCTGC GCGCCACGCG ACGCCTGTTC
GCATTTTCGA TCCTCTATCT GTTCGCGCTG TTTGCCGTTC TGCTGCTCGA TGTGCTTGCG
AAGGCCGTCG CGCCGTTGAT CTGGTAA
|
|---|
| Protein sequence | MRRARRAAYL NKVSCVLPVV DQNAIELPPR ISEASVADYF ALLKPRVMSL VIFTALVGLM
IAPGHVHPVL GFTAILCIAV GAGASGALNM ALEGDIDVLM SRTANRPIPR GRITRGEAMG
FGLTLSFFSV MTLGALVNWY AGGLLAFTIF FYVVIYTMGL KRRTAQNIVI GGAAGALPPV
VAWAAATGSL SVEPLLLFLI IFFWTPPHFW ALALFRSDDY ARAGVPMLPV VAGPDATRLQ
ILLYTIVLVA IAAAPWPLGY FDWVYGVTSL VLGAGMLVLA INVYRHRTGS TALRATRRLF
AFSILYLFAL FAVLLLDVLA KAVAPLIW
|
|---|
| |