Gene Nham_0227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_0227 
Symbol 
ID4029998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp249672 
End bp251870 
Gene Length2199 bp 
Protein Length732 aa 
Translation table11 
GC content67% 
IMG OID637968763 
Productpenicillin-binding protein 1A 
Protein accessionYP_575587 
Protein GI92115858 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.369543 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGTGGG GACGAAAAAA GAAGCGCGGC GGGCGCAAGG AGCCGGTATT CGGCGGGGTT 
GCCGCTTCGC TCGCGGAGTT GCGCCTCAAT CCGCTCGATC GCATCACGGT TGCCGATGAC
AAGCCGGCCA GCCGCGCGGC GCCGCGCAAA GCCGCCGGTC CGGGTGGTGA TGGATCGCGC
GAGCGCAAGC CGTCGCAGAA TCGGAAAGGT CGCAAAGGAC GGGCAAGGAA GCGGACGCGG
GGCCGCCTGT CCCGGCTGTT CTACTGGGGC GCCGTGCTCG CTTTGTGGGG GGGCATCGCC
ATCGTCGGCG TGGTGGTCTA TGTCGGCGCG CATCTGCCGC CGATTCAGTC GCTGGAAATT
CCAAAACGCC CGCCGACCAT CAAGATCGTC GGCGCGGACG GCAGCGTGCT GGCGACGCGC
GGCGAAATGG CCGGAAGCAA CGTCTCGCTC AAGGATCTGC CGCCCTATTT GCCGAAGGCC
TTCATCGCGA TCGAGGACCG CCGGTTCTAT TCGCACTACG GCGTCGATCC GATCGGCATC
CTGCGCGCAG CCGTGACCAA TGTCCTGCAC ATGGGCGTGT CGCAGGGCGG CTCGACGCTG
ACCCAGCAAC TCGCCAAGAA CCTGTTCCTG ACCCAGGAGC GCACGCTCGA GCGGAAGCTT
CAGGAGGTCG AACTCGCGCT CTGGCTGGAG CGCAAGCACA CCAAGGCGCA GATTCTCGAA
CTTTACCTCA ACCGGGTCTA CTTCGGCTCC GGCGCCTATG GCGTCGAGGC GGCCGCGCAG
AAGTATTTCG GGAAGCCCGC GAAGGATGTC ACGCTCGCCG AGGCCGCCAT GCTGGCCGGT
CTGGTCAAGT CGCCGTCGCG GCTTGCGCCG AACCGCAACC CGGAAGGCGC CGAGGCCCGC
GCAAAGGTCG TGCTCGCGGC AATGGCCGAC GCCCACTTCA TTACCGAGCA GCAGGCGCGC
GCTGCCACCA CCCGTCCCTC TTACGCCGTG AAGCCGGTCG GCGCCGGCAC CATCAACTAT
GTCGCCGACT GGGTCGGCGA AGTGCTCGAC GATCTGGTCG GCCAAGTCGA CCAGAATATC
GTCGTCGAAA CTACCATCGA TCCGAAATTG CAGAGCGTGG CGGAAGCCGC CCTGATCGAC
GAACTGGCCG CGAAAAGCGT CAAGTTCAAT GTCAGCCAGG GCGCGTTGGT GGCGATGACG
CCCGATGGCG CGATCCGCGC CATGGTCGGC GGGCGCAACT ACGGCGACAG CCAGTTCAAT
CGCGCGGTCA TGGCGAAGCG CCAGCCCGGC TCCGCGTTCA AGCCGTTCGT CTATCTCACC
GCGATCGAGG CCGGGCTCAC GCCCGAGACG ATCCGGCAGG ACGCTCCGCT CGATATCAAG
GGCTGGCGGC CGGAGAACTA CGGTCATGAA TACTTCGGCG CGGTGACGCT GACCCAGGCG
CTCGCGATGT CGCTGAACAC GGTTGCGGTC CGGCTTGGAC TGGAGGTCGG GCCTGTGAAT
GTGGTCCGCA CCGCGCACCG GCTCGGCATC ACATCAAAAC TGGAGCCGAA CGCCTCGATC
GCGCTCGGGA CCTCCGAGGT GTCGCCGCTG GAACTGGTCG GCGCCTACGC GCCGTTCGCC
AACGGCGGCT ATGCCGCCAA TCCCCATATC GTCGATCGCA TCCGCACCGT CGACGGCAAC
AAACTTCTCT ACGCACGCGC GCAGGCCGCC CCCGGCCGGG TGATCGATCC GCGCAGCGTC
GCCATGATGA ACACGATGAT GGAACAGACG CTCATCAGCG GGACCGCACG CAAGGCCGGG
ATTCCGGGAT GGACGGCCGC CGGCAAGACC GGCACCAGCC AGGATTTTCG CGATGCGTGG
TTCGTCGGCT ACACCGCAAA GCTCGTGACC GGGGTGTGGC TCGGCAACGA CGACAACTCG
CCGACCCGCA AGGCCACCGG CGGCGGCCTG CCGGTGGAGG TCTGGACGCG CTTCATGCGC
ACCGCGCATG AGGGCATGCA GCCCGAACCG ATCCCCGGCA CCCAGCGGGG CGGCCCCCTG
CCGGACATTG CGCAGCTCGG CCGGCAGGTC ATCGCGCCGG CTCCCGCCGC TCCTGCGTCC
GTCGGCGGCC CGCCTCAACC GGTCCGGGCC AATGTGCGGC CGGAAGCCGC CAGCGGACTG
GACGGCTGGC TCGTGGACCG GCTGTTTGGT GGGCGCTGA
 
Protein sequence
MVWGRKKKRG GRKEPVFGGV AASLAELRLN PLDRITVADD KPASRAAPRK AAGPGGDGSR 
ERKPSQNRKG RKGRARKRTR GRLSRLFYWG AVLALWGGIA IVGVVVYVGA HLPPIQSLEI
PKRPPTIKIV GADGSVLATR GEMAGSNVSL KDLPPYLPKA FIAIEDRRFY SHYGVDPIGI
LRAAVTNVLH MGVSQGGSTL TQQLAKNLFL TQERTLERKL QEVELALWLE RKHTKAQILE
LYLNRVYFGS GAYGVEAAAQ KYFGKPAKDV TLAEAAMLAG LVKSPSRLAP NRNPEGAEAR
AKVVLAAMAD AHFITEQQAR AATTRPSYAV KPVGAGTINY VADWVGEVLD DLVGQVDQNI
VVETTIDPKL QSVAEAALID ELAAKSVKFN VSQGALVAMT PDGAIRAMVG GRNYGDSQFN
RAVMAKRQPG SAFKPFVYLT AIEAGLTPET IRQDAPLDIK GWRPENYGHE YFGAVTLTQA
LAMSLNTVAV RLGLEVGPVN VVRTAHRLGI TSKLEPNASI ALGTSEVSPL ELVGAYAPFA
NGGYAANPHI VDRIRTVDGN KLLYARAQAA PGRVIDPRSV AMMNTMMEQT LISGTARKAG
IPGWTAAGKT GTSQDFRDAW FVGYTAKLVT GVWLGNDDNS PTRKATGGGL PVEVWTRFMR
TAHEGMQPEP IPGTQRGGPL PDIAQLGRQV IAPAPAAPAS VGGPPQPVRA NVRPEAASGL
DGWLVDRLFG GR