| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0227 |
|---|
| Symbol | |
|---|
| ID | 4029998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 249672 |
|---|
| End bp | 251870 |
|---|
| Gene Length | 2199 bp |
|---|
| Protein Length | 732 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637968763 |
|---|
| Product | penicillin-binding protein 1A |
|---|
| Protein accession | YP_575587 |
|---|
| Protein GI | 92115858 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.369543 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTGGG GACGAAAAAA GAAGCGCGGC GGGCGCAAGG AGCCGGTATT CGGCGGGGTT
GCCGCTTCGC TCGCGGAGTT GCGCCTCAAT CCGCTCGATC GCATCACGGT TGCCGATGAC
AAGCCGGCCA GCCGCGCGGC GCCGCGCAAA GCCGCCGGTC CGGGTGGTGA TGGATCGCGC
GAGCGCAAGC CGTCGCAGAA TCGGAAAGGT CGCAAAGGAC GGGCAAGGAA GCGGACGCGG
GGCCGCCTGT CCCGGCTGTT CTACTGGGGC GCCGTGCTCG CTTTGTGGGG GGGCATCGCC
ATCGTCGGCG TGGTGGTCTA TGTCGGCGCG CATCTGCCGC CGATTCAGTC GCTGGAAATT
CCAAAACGCC CGCCGACCAT CAAGATCGTC GGCGCGGACG GCAGCGTGCT GGCGACGCGC
GGCGAAATGG CCGGAAGCAA CGTCTCGCTC AAGGATCTGC CGCCCTATTT GCCGAAGGCC
TTCATCGCGA TCGAGGACCG CCGGTTCTAT TCGCACTACG GCGTCGATCC GATCGGCATC
CTGCGCGCAG CCGTGACCAA TGTCCTGCAC ATGGGCGTGT CGCAGGGCGG CTCGACGCTG
ACCCAGCAAC TCGCCAAGAA CCTGTTCCTG ACCCAGGAGC GCACGCTCGA GCGGAAGCTT
CAGGAGGTCG AACTCGCGCT CTGGCTGGAG CGCAAGCACA CCAAGGCGCA GATTCTCGAA
CTTTACCTCA ACCGGGTCTA CTTCGGCTCC GGCGCCTATG GCGTCGAGGC GGCCGCGCAG
AAGTATTTCG GGAAGCCCGC GAAGGATGTC ACGCTCGCCG AGGCCGCCAT GCTGGCCGGT
CTGGTCAAGT CGCCGTCGCG GCTTGCGCCG AACCGCAACC CGGAAGGCGC CGAGGCCCGC
GCAAAGGTCG TGCTCGCGGC AATGGCCGAC GCCCACTTCA TTACCGAGCA GCAGGCGCGC
GCTGCCACCA CCCGTCCCTC TTACGCCGTG AAGCCGGTCG GCGCCGGCAC CATCAACTAT
GTCGCCGACT GGGTCGGCGA AGTGCTCGAC GATCTGGTCG GCCAAGTCGA CCAGAATATC
GTCGTCGAAA CTACCATCGA TCCGAAATTG CAGAGCGTGG CGGAAGCCGC CCTGATCGAC
GAACTGGCCG CGAAAAGCGT CAAGTTCAAT GTCAGCCAGG GCGCGTTGGT GGCGATGACG
CCCGATGGCG CGATCCGCGC CATGGTCGGC GGGCGCAACT ACGGCGACAG CCAGTTCAAT
CGCGCGGTCA TGGCGAAGCG CCAGCCCGGC TCCGCGTTCA AGCCGTTCGT CTATCTCACC
GCGATCGAGG CCGGGCTCAC GCCCGAGACG ATCCGGCAGG ACGCTCCGCT CGATATCAAG
GGCTGGCGGC CGGAGAACTA CGGTCATGAA TACTTCGGCG CGGTGACGCT GACCCAGGCG
CTCGCGATGT CGCTGAACAC GGTTGCGGTC CGGCTTGGAC TGGAGGTCGG GCCTGTGAAT
GTGGTCCGCA CCGCGCACCG GCTCGGCATC ACATCAAAAC TGGAGCCGAA CGCCTCGATC
GCGCTCGGGA CCTCCGAGGT GTCGCCGCTG GAACTGGTCG GCGCCTACGC GCCGTTCGCC
AACGGCGGCT ATGCCGCCAA TCCCCATATC GTCGATCGCA TCCGCACCGT CGACGGCAAC
AAACTTCTCT ACGCACGCGC GCAGGCCGCC CCCGGCCGGG TGATCGATCC GCGCAGCGTC
GCCATGATGA ACACGATGAT GGAACAGACG CTCATCAGCG GGACCGCACG CAAGGCCGGG
ATTCCGGGAT GGACGGCCGC CGGCAAGACC GGCACCAGCC AGGATTTTCG CGATGCGTGG
TTCGTCGGCT ACACCGCAAA GCTCGTGACC GGGGTGTGGC TCGGCAACGA CGACAACTCG
CCGACCCGCA AGGCCACCGG CGGCGGCCTG CCGGTGGAGG TCTGGACGCG CTTCATGCGC
ACCGCGCATG AGGGCATGCA GCCCGAACCG ATCCCCGGCA CCCAGCGGGG CGGCCCCCTG
CCGGACATTG CGCAGCTCGG CCGGCAGGTC ATCGCGCCGG CTCCCGCCGC TCCTGCGTCC
GTCGGCGGCC CGCCTCAACC GGTCCGGGCC AATGTGCGGC CGGAAGCCGC CAGCGGACTG
GACGGCTGGC TCGTGGACCG GCTGTTTGGT GGGCGCTGA
|
|---|
| Protein sequence | MVWGRKKKRG GRKEPVFGGV AASLAELRLN PLDRITVADD KPASRAAPRK AAGPGGDGSR
ERKPSQNRKG RKGRARKRTR GRLSRLFYWG AVLALWGGIA IVGVVVYVGA HLPPIQSLEI
PKRPPTIKIV GADGSVLATR GEMAGSNVSL KDLPPYLPKA FIAIEDRRFY SHYGVDPIGI
LRAAVTNVLH MGVSQGGSTL TQQLAKNLFL TQERTLERKL QEVELALWLE RKHTKAQILE
LYLNRVYFGS GAYGVEAAAQ KYFGKPAKDV TLAEAAMLAG LVKSPSRLAP NRNPEGAEAR
AKVVLAAMAD AHFITEQQAR AATTRPSYAV KPVGAGTINY VADWVGEVLD DLVGQVDQNI
VVETTIDPKL QSVAEAALID ELAAKSVKFN VSQGALVAMT PDGAIRAMVG GRNYGDSQFN
RAVMAKRQPG SAFKPFVYLT AIEAGLTPET IRQDAPLDIK GWRPENYGHE YFGAVTLTQA
LAMSLNTVAV RLGLEVGPVN VVRTAHRLGI TSKLEPNASI ALGTSEVSPL ELVGAYAPFA
NGGYAANPHI VDRIRTVDGN KLLYARAQAA PGRVIDPRSV AMMNTMMEQT LISGTARKAG
IPGWTAAGKT GTSQDFRDAW FVGYTAKLVT GVWLGNDDNS PTRKATGGGL PVEVWTRFMR
TAHEGMQPEP IPGTQRGGPL PDIAQLGRQV IAPAPAAPAS VGGPPQPVRA NVRPEAASGL
DGWLVDRLFG GR
|
|---|
| |