Gene Nham_0179 details

Gene Information

• Locus tag: Nham_0179
• ID: 4030772
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: -
• Start bp: 199614
• End bp: 200234
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637968714
• Product: 3'-5' exonuclease
• Protein accession: YP_575540
• Protein GI: 92115811
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0349] Ribonuclease D

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.00803697
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCATCC GCCTGCACCG CGGCGATCTG CCGGACCAGG ACCTCAAGCG CTACACGCAC 
TCGGCGGCGA TCGACACCGA GACCATGGGT CTCAATCCGC ATCGCGACCG GCTGTGCGTG 
GTGCAGATGT CGCCGGGCGA CGGCTCGGCC GACGTGATCC AGATCGCGCA GGGCCAGCGT 
GAGGCGCCCA ACCTGAAACA GCTTCTGGCC GATCCGACCA TCGTCAAGAT CTTCCACTTC 
GCGCGCTTCG ATCTCGCCGC GCTCTCCAAC GCATTCGGCG TGATGCCACA GCCGGTCTAC 
TGCACCAAGA TCGCCTCGCG GCTGATCCGC ACCTACACCG ATCGGCATGG CCTGAAGGAT 
CTGGTGCGCG AGCTGCTCAA CATCGAACTG TCGAAGCAAC AGCAGTCGAG CGACTGGGGG 
GCGCAGACAC TGAGCGATGC GCAGCTCGCC TACGCCGCTT CCGACGTGCT GCATCTGCAT 
GCCCTGCGCG ACAAGCTCGA TGCCATGCTG GCGCGCGAGA ATCGCACCGG GATGGCGCAG 
GCCTGTTTCG AGTTCCTGCC GACACGGGCA AAGCTCGATC TTTCCGGCTG GGGAGCCGAG 
GACATTTTTG CGCACGCGTG A 

 

Protein sequence

MTIRLHRGDL PDQDLKRYTH SAAIDTETMG LNPHRDRLCV VQMSPGDGSA DVIQIAQGQR 
EAPNLKQLLA DPTIVKIFHF ARFDLAALSN AFGVMPQPVY CTKIASRLIR TYTDRHGLKD 
LVRELLNIEL SKQQQSSDWG AQTLSDAQLA YAASDVLHLH ALRDKLDAML ARENRTGMAQ 
ACFEFLPTRA KLDLSGWGAE DIFAHA