Gene Nham_0169 details

Gene Information

• Locus tag: Nham_0169
• ID: 4029326
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: +
• Start bp: 189495
• End bp: 191336
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 637968704
• Product: dihydroxy-acid dehydratase
• Protein accession: YP_575530
• Protein GI: 92115801
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGCCT ATCGCTCCCG CACCTCCACC CACGGCCGCA ACATGGCCGG CGCCCGCGGC 
CTGTGGCGCG CCACCGGTAT GAAGAATGAA GACTTCGGCA AGCCGATCAT CGCCGTGGTC 
AATTCCTTCA CCCAGTTCGT GCCCGGCCAT GTCCACCTCA AGGATCTCGG CCAGCTCGTG 
GCGCGCGAGA TCGAGAAGGC CGGCGGTGTC GCCAAGGAGT TCAACACCAT CGCGGTGGAT 
GACGGCATCG CCATGGGCCA CGACGGCATG CTCTACAGCC TGCCCTCGCG CGAGATCATC 
GCCGACAGCG TCGAATACAT GGTCAACGCG CATTGCGCCG ACGCCATGGT CTGCATCTCC 
AACTGCGACA AGATCACGCC CGGAATGCTG ATGGCGGCGT TGCGCCTCAA CGTTCCCGCG 
GTGTTCGTCT CCGGCGGTCC GATGGAGTCG GGCAAGGTCA ACGTCAACGG CAAGATCAGG 
TCGGTCGATC TGATCGACGC CATGGTCGCC GCCGCCGACG ACAGCGTGAG CGACGCCGAC 
GTCGAGGCGA TCGAACGCTC GGCCTGCCCT ACCTGCGGCT CGTGCTCGGG CATGTTCACC 
GCCAATTCGA TGAACTGCCT GACCGAGGCG CTCGGCCTCG CATTGCCCGG CAACGGCTCG 
GTGCTCGCCA CCCACGCCGA CCGCAAGGGC CTGTTCGTCG AAGCCGGTCA TCTCATCGTC 
GATCTGGCGC GGCGCTACTA CGAGCAGGAC GACGCGCGCG TGCTGCCGCG CGCGATCGCG 
AGCTTCAAGG CGTTCGAAAA CGCGATGACG CTCGACATCT CGATGGGCGG CTCCACCAAC 
ACCGTGCTGC ATCTGCTCGC CGCGGCTTAC GAAGGCGAAG TGCCTTTCAC AATGAAGGAC 
ATCGACCGGC TGTCGCGCCG CGTGCCGGTG TTGTGCAAGG TCGCGCCCTC GGTGGTGGAC 
GTGCATCTGG AAGACGTGCA TCGCGCCGGC GGCATCATGG GCATTCTCGG CGAACTCGAT 
CGCGCGGGCC TGATCGACTC CAGCCTGCCG ACGGTTCACA GTACCTCGCT GAAGGACGGG 
CTGGAACGCT GGGACATCAA ACGGACAAAA AGCGACAGCG TGCGCAGTTT CTATCTGGCC 
GCGCCGGGCG GCGTGCGCAC CCAAGTCGCG TTCAGTCAGG ACAAGCGCTT CGAGGAGCTC 
GACGCCGACC GCAGCTCGGG CTGCATCCGT GACGCCGAAC ACGCTTTCTC GAAGGACGGC 
GGTCTCGCCG TGCTCTACGG CAACATCGCG CGCGACGGCT GCATCGTGAA GACCGCGGGC 
GTCGACGACA GCATCCTGAC ATTCTCTGGC CCCGCGCGCA TCTTTGAGAG CCAGGACGCC 
GCGGTGGACG CCATCCTCAC CAACAGGATC CAGCCGGGCG ATGTGGTGCT GATCCGCTAC 
GAGGGACCGC GCGGCGGTCC GGGTATGCAG GAAATGCTGT ATCCGACCAG CTATCTGAAA 
TCGAAGGGCC TCGGCAAGCA GTGCGCGCTG ATCACAGACG GCCGGTTCTC CGGCGGCTCG 
TCGGGTCTGT CGATCGGCCA TGTCTCGCCG GAAGCGGCGG AGGGCGGTGC GATCGGTCTC 
GTCGAGGAAG GTGATCGCAT CGTGTTCGAC ATTCCCAACC GCAAGGTGCA TCTCGACGTT 
AGCGACGCCG AGCTCGAGCG TCGTCGCGCT GCGATGGAAG CGAAGGGCGA CAAGGCGTGG 
AAGCCGGCGC CGCGCAAGCG CCGCGTGACG ATGGCGCTGA AGGCCTACGC CGCCCATGCC 
ACCAGCGCCG CGCTCGGCGC CGTGCGGGTG GTGAAGGATT AG 

 

Protein sequence

MPAYRSRTST HGRNMAGARG LWRATGMKNE DFGKPIIAVV NSFTQFVPGH VHLKDLGQLV 
AREIEKAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSREII ADSVEYMVNA HCADAMVCIS 
NCDKITPGML MAALRLNVPA VFVSGGPMES GKVNVNGKIR SVDLIDAMVA AADDSVSDAD 
VEAIERSACP TCGSCSGMFT ANSMNCLTEA LGLALPGNGS VLATHADRKG LFVEAGHLIV 
DLARRYYEQD DARVLPRAIA SFKAFENAMT LDISMGGSTN TVLHLLAAAY EGEVPFTMKD 
IDRLSRRVPV LCKVAPSVVD VHLEDVHRAG GIMGILGELD RAGLIDSSLP TVHSTSLKDG 
LERWDIKRTK SDSVRSFYLA APGGVRTQVA FSQDKRFEEL DADRSSGCIR DAEHAFSKDG 
GLAVLYGNIA RDGCIVKTAG VDDSILTFSG PARIFESQDA AVDAILTNRI QPGDVVLIRY 
EGPRGGPGMQ EMLYPTSYLK SKGLGKQCAL ITDGRFSGGS SGLSIGHVSP EAAEGGAIGL 
VEEGDRIVFD IPNRKVHLDV SDAELERRRA AMEAKGDKAW KPAPRKRRVT MALKAYAAHA 
TSAALGAVRV VKD