| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0106 |
|---|
| Symbol | trmE |
|---|
| ID | 4029607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 122606 |
|---|
| End bp | 123979 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637968640 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_575467 |
|---|
| Protein GI | 92115738 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.446893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCGC GAGAGCAAAC GATCTTCGCC TTGTCGTCGG GCCGGCCGCC ATCGGCGATC
GCGGTCGTGC GAGTCTCGGG CGCGGAGGCC GGCACCGCAC TTCAAGAAAT CGCAGGCGCA
ATTCCCGTCG TGCGCACGGC GAAGCGGGTC TTGCTGCGCG ACCTGCTCGG AGAAGCCATT
GATGATGCAA TTGTTTTGTG GTTCGCCGGA CCTGCGAGCG CGACCGGCGA AGATGTCGCG
GAGTTTCACG TTCACGGCAG CCGCGCGGTG CTGAATGCCT TGTTCGCGGC GTTGTCGTCG
ATCGACCATG TGAGACCTGC TGAGCCGGGA GAATTTACGC GGCGTGCGTT CGAGAACGGC
AAGATCGATC TCACCGAGGC CGAAGGGCTC GACGATCTCA TCCATGCCGA CACCGACCGG
CAGCGCCGGC AAGCGCTGCG GCAATTGCAG GGACTGCTTG GTGATCGCGC GAGGGAGTGG
CGCAGGGAGT TGATCGAGGC GTCGGCCTTG ATCGAGGCCG GAATCGATTT CGCCGATGAA
GGCGATGTGC CGGACGATCT GCTGAAGCCC GCGATGGAGA AGATCGCGCG GCTCCGTCGC
GAGATTGAAG AAACCCTTGC GGCATCGGCA CAAAGCGAAC GGCTGCGCGA CGGCATGACG
GTCGCGATCG CAGGCCCGCC GAACGCCGGC AAGTCGACAC TACTCAATCG TCTCGCGCGT
CGCGAGGCGG CGATCGTGTC GCCGTATGCC GGAACCACGC GCGATGTCAT CGAAGTGCAT
CTCGATCTCG ACGGTTATCC GGTGACGCTG ATCGATACCG CGGGCATTCG CGAGACCGAC
GATCCAGTCG AGCAGGAGGG CGTGCGGCGC GCGCGCGATC GGGCCGCGTC GGCGGATCTG
GTGCTGTGGC TTGCGGATGA TGACAATGGC GTCGGTCCGT CGCAAACGAT CGGCGAGGGC
GGTGTGCCGC TCTGGCTGGT GCGCAACAAA ATTGATGTTT CGGGCGCGGA AAGCGATGGG
GCGAACCCGA GGCAGCTTGA GGCGAAACCG GGTCAGGGTA TTTTGCCGCG GCATTTCTGG
ATTTCTGCGT CGCGCGGCGA TGGCGTCGAT GAGTTGGTGG CGGCGCTGAC GGCGTTTTCG
GACGGTTGGT TCGGTTCGGG CGAAACCGCT GTGATCACCC GTTTGCGGCA CCGCAACATA
TTGCAGGATG CTGCAGCATC GCTTGCGAAG GCTGAGGCGT TGATCGGACA GGGCGACGAA
CTGGTGGCGG AAGAGATCAG AATTGCGGTT CGATTGATCG GGCGTCTGCT CGGGCGCGTC
GATATCGATG ATATTCTTGA TTCACTCTTT CACGATTTTT GTATAGGTAA GTAA
|
|---|
| Protein sequence | MHPREQTIFA LSSGRPPSAI AVVRVSGAEA GTALQEIAGA IPVVRTAKRV LLRDLLGEAI
DDAIVLWFAG PASATGEDVA EFHVHGSRAV LNALFAALSS IDHVRPAEPG EFTRRAFENG
KIDLTEAEGL DDLIHADTDR QRRQALRQLQ GLLGDRAREW RRELIEASAL IEAGIDFADE
GDVPDDLLKP AMEKIARLRR EIEETLAASA QSERLRDGMT VAIAGPPNAG KSTLLNRLAR
REAAIVSPYA GTTRDVIEVH LDLDGYPVTL IDTAGIRETD DPVEQEGVRR ARDRAASADL
VLWLADDDNG VGPSQTIGEG GVPLWLVRNK IDVSGAESDG ANPRQLEAKP GQGILPRHFW
ISASRGDGVD ELVAALTAFS DGWFGSGETA VITRLRHRNI LQDAAASLAK AEALIGQGDE
LVAEEIRIAV RLIGRLLGRV DIDDILDSLF HDFCIGK
|
|---|
| |