Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_0100 |
Symbol | holA |
ID | 4029601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | + |
Start bp | 115805 |
End bp | 116833 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637968634 |
Product | DNA polymerase III subunit delta |
Protein accession | YP_575461 |
Protein GI | 92115732 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1466] DNA polymerase III, delta subunit |
TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.427702 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTCGCGC TGCGCGGAAA AGACGTCGAC AGCTTTCTCG CCCGGCCCGA TCCCGGACGC CCGATCATCC TGCTTTACGG CCCCGATGCC GGCCTGGTGC GCGAGCGCGC CGACGCCCTG ATGGCCTCGG CCGTCGACGA TCCCAGCGAT CCGTTTTCGC TGGTGCGGCT CGACGGCGAC GATCTCGCTA CTGAGCCGTC GCGTCTTGTC GATGAGGCGA TGACGGTGCC GCTGTTCGGC GGCCGCCGCG CCATTCGCGT CAAGGCCGGC ACGCGCAATT TTGCTGGCGG TATCGAAACG CTGGCGGACT CCGCGATCCA GGATTGCCGG ATCGTGATCG AGGCCGGCGA GCTGCGGCCC GAAGCGCCGC TGCGCAAGGC CTGCGAGCGC GCGAAGAACG CGGTGGCGAT CGCCTGCTAT CCCGACACCG AACGCGATCT GGCGCGGTTG ATCGACGACG AGTTGCGGCT CTCGAACCTG AAGATCGCAC CCGACGCCCG CGCCACGCTG ATGTCTTTGC TCGGCGGCGA CCGTCAGGCC TCGCGCAACG AACTGCGCAA GATCGCGCTT TATGCTCATG GACAGCGCGA GATCGCACTG GACGACGTGA TGGCTGTCGT CTCCGACGCA TCCGACTTCA AGCTCGATCC CATCGTCGAC GCTGCGTTCG CCGGACAGCC GGCCGTGGTC GAAACCGAAT TCGCCAAGGC CATGGTCGCC GGCACCTATC CGGGCCTCGT CATTCTGGCC GCGCAACGTC AGGTCGCCGC CCTGCACAAG GCGGCGCTGG CGATGGAAGG CGGCGCGTCG GCCTCATCGG CCGCCGAGAG CGGATTTCCG CGGCTGCACT TTTCGCGCAA GACAGCGGTG GAAACGGCGC TGCGCAACTT CAGCGCCGCG CGGCTGCTCC AGGTGATGGA TCAGCTTGCG GTTGCCGCCC TGGAGGCGCG CAAGCAGACG GTGCTGGCGC CCGTGATTGC ACAGCGCGCG CTGATGTCGA TCGCGGTGAA CGCGCGGAGA AGGGGATGA
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Protein sequence | MVALRGKDVD SFLARPDPGR PIILLYGPDA GLVRERADAL MASAVDDPSD PFSLVRLDGD DLATEPSRLV DEAMTVPLFG GRRAIRVKAG TRNFAGGIET LADSAIQDCR IVIEAGELRP EAPLRKACER AKNAVAIACY PDTERDLARL IDDELRLSNL KIAPDARATL MSLLGGDRQA SRNELRKIAL YAHGQREIAL DDVMAVVSDA SDFKLDPIVD AAFAGQPAVV ETEFAKAMVA GTYPGLVILA AQRQVAALHK AALAMEGGAS ASSAAESGFP RLHFSRKTAV ETALRNFSAA RLLQVMDQLA VAALEARKQT VLAPVIAQRA LMSIAVNARR RG
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