Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_0080 |
Symbol | |
ID | 4029618 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | - |
Start bp | 93054 |
End bp | 94781 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637968613 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_575441 |
Protein GI | 92115712 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.23298 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTTTCT TCAAAAAATG GTCAATCGCA AAAGAAAATG CCGCGAAAAC CGCAGCGATC AGTAAGTCTC AGGCCGTAAT CGAGTTCAGA CTCGACGGTA CGGTCATCAC CGCCAACGAG AACTTTCTCA ACATCCTCGG TTACGGGCTG GCGGACGTTC AAGGCAAGCA CCACAGCATG TTCGTGGAGG CCGACGAACG ATCCAGCGCC GCATACCGCG ACTTCTGGGC CAGGCTGAAT CAGGGCGAGT CGCAATCGGC TGAGTATAAG CGCATCGACA GGGACGGCGA GGAGGTCTGG GTTCAGGCTT CCTATCTTCC AGTGCTGGAT GCGAGGGGGA AACCGACAAA AGTCATCGAG ATCGCGTCCG ACATCACCGC GAAAAAGATC GAGGCCCTGG ACCATGCGGG TCAGGTTTCC GCCATCGAAC GCACACAGGC GGTGGTCGAA TTCAATCTGG ACGGCACGAT TATTACCGCA AACAAAAACT TCCTCAACGC GTTGGGCTAC GCCCTTGGCG AAGTGCAGGG GAAGCATGAC CGCATGTTCG TGGAGCCGTC GGAGCGAGCA GGTGCTGCCT ATCGCGAATT CTGGGCCAAA CTGAATCAGG GTCAGGCTCA GTCGGCTGAA TGCAAGCGCA TTGGTAAAGC CGGAAACGAA GTCTGGATTC AGGCGACCTA TAACCCGATC GCAGACGAGA ACGGCAAGCC CTTCAAGGTC GTCACGTTCG CGACTGACGT AACCAGCCAG AAATTGAAGA TGGCCAATCT GGAAAGCCAG ATCACAGCGA TCGGAAAGTC GCAGGCGGTC GTCGAATTCG GCATGGACGG AAAGGTTATT ACCGCCAACG ATAATTCCCT GAAAACGTTC GGTTACTCCC TCGCCAAGGA GGTCCAGGGC AAGCACCACA GCATGTTCGT GGAGGCGGGC GAGCGAGCCA GCACCGCATA CCGCGACTTC TGGGCCAGGC TCAATCGGGG CGAGTCTCAA TCGGCCGAGT ACAAGCGTAT CGGCAAGGAT GGCAAAGAGA TCTGGGTTCA GGCTTCCTAT AATCCGGTCC TGGACTCGAA GGGAAAACCG ACGAAAGTTA TCCAGCTCGC GACCGATATC ACCGCCAGGA AGATCGAGGC TCTCGACAAT GCGGGTCAGC TTGCCGCCAT CGATCGCGCG CAGGCGGTGG CCGCATTCAA CCTGGACGGC ACGATTATTG CCGCCAACGA TAAGTACCTC AAGGCGATGG GCTACACCCT CGGCGAAGTA CGGGGCAAGC ATGATGGCAT GTTCGTAGAG CCATCAGAGC GGGCAGGTGC TGCTTATCGC GACTTCTGGG CACGCTTGAA TCGCGGCGAG TCTCAATCGG CCGAACACAA ACGTATCGGC AAGGACGGCA AGGAAGTCTG GATCCAGGCC TCCTACACTC CGATACTCGA CCTCAACGGC AAGCCGATCA AGGTTGTCGA ATACGCCACG GTGATCGAGT CGGTCGCGGA CGGTAGCGAA GAGGGAAGCC TCTCCATCCA GGAGGCACCC GTGTCGGTGG CCAATCAGGC TGCCGATGAC ATAACCTCAG AGTCCGTCGG GCCGAGCTTG AGCATGAGGC GGCTGGAGGC GAGCCGCAAG AACGCGAGCG CTGGTCCGTC TCTATTCTCC AATCTCCTGG CGAATCTTCG GGACGGATTG AGCAACGCGA TGGTTTCCTC GGCGAGAGCT GTGACCAACT TTTTGTGA
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Protein sequence | MFFFKKWSIA KENAAKTAAI SKSQAVIEFR LDGTVITANE NFLNILGYGL ADVQGKHHSM FVEADERSSA AYRDFWARLN QGESQSAEYK RIDRDGEEVW VQASYLPVLD ARGKPTKVIE IASDITAKKI EALDHAGQVS AIERTQAVVE FNLDGTIITA NKNFLNALGY ALGEVQGKHD RMFVEPSERA GAAYREFWAK LNQGQAQSAE CKRIGKAGNE VWIQATYNPI ADENGKPFKV VTFATDVTSQ KLKMANLESQ ITAIGKSQAV VEFGMDGKVI TANDNSLKTF GYSLAKEVQG KHHSMFVEAG ERASTAYRDF WARLNRGESQ SAEYKRIGKD GKEIWVQASY NPVLDSKGKP TKVIQLATDI TARKIEALDN AGQLAAIDRA QAVAAFNLDG TIIAANDKYL KAMGYTLGEV RGKHDGMFVE PSERAGAAYR DFWARLNRGE SQSAEHKRIG KDGKEVWIQA SYTPILDLNG KPIKVVEYAT VIESVADGSE EGSLSIQEAP VSVANQAADD ITSESVGPSL SMRRLEASRK NASAGPSLFS NLLANLRDGL SNAMVSSARA VTNFL
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