| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0058 |
|---|
| Symbol | |
|---|
| ID | 4029768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 67557 |
|---|
| End bp | 71045 |
|---|
| Gene Length | 3489 bp |
|---|
| Protein Length | 1162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637968591 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_575419 |
|---|
| Protein GI | 92115690 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.106754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGCGC CTCGCCCCGT TCATCCCGAC GCCAGCGCGC GTCAGCAGCG CGCGTCCGAC
CCGGCGACGT CGGTTTTCGT CTCGGCCAAT GCCGGATCGG GCAAGACCCA TGTGCTGGTG
CAACGCGTGA TCCGCCTGCT GCTCAATGGC GTTGATCCGG CGCGCATCCT CTGCATCACC
TTCACCAAGG CCGCCGCCGC CAACATGTCG GAGCGGGTGT TCTCGACGCT GGGACACTGG
GTCACGCTCG ACGATGAAGC CCTGAACGCG GCGCTGCGCG ACACCGGTAT CGCGCAGCCC
GATGCCTGGT CGCGCCAGCG CGCGCGCAAA CTGTTCGCGG CAGCACTGGA AACGCCGGGC
GGGCTGAAGG TGCAGACCAT CCACGCACTC TGCACGCGGC TGTTGCAGCA GTTTCCGTTC
GAGGCGCGGG TGCCGGCGCG TTTCAGCGTG CTCGACGAGC GCGACCAGAC CGGGATGATG
GAGCGCGCGA GCATCAGTGT CATGCTCGAT GCATCGCAGA ATCCCGACAG CCCCGCCGGC
CGCGCGCTGC AATACGCCAT GGGCGCGGCC GCCGACACGA CGCTGCGTGA CGTGGTCAAC
CAGGCCTGTC TCAGCCGCGA TCACTTCATG GCCTGGACCG AGGATCGCGG CATCGAGCAG
GCGATCAGCG ATGTGGCCGA CGCGCTCGAC GTCGATCCCG CCGAGCGCGT CGAGGATGTC
GAACGCGAGA TCGTCGACGG GCCGAACCTG CCAATATCTG AATGGGAAGC GCTCGCCGCG
ATTCTGGAAA CAGGCAACAA ATCCGACATC GAGCAGGCCA GACGCTTGCG CGAGGCGCAC
GCCATGATCG GCGAGGCGGC GCAAGCCGAT CGCTATCTCG ATGTCTTCCT GACCGGCGAT
TCCGTCTTGC GCAAATCCTT CGTCACCAAG AAGATCAGCG ATGTCAGACC CGACATCGCC
GCGATGCTCG ACCGGGAGAG CCAGCGTGTG ATCGCGCTGC TCGAACGCCG CCGCGCGCTG
ACCATCCGCG ACCGCACGCA ATCCCTTCTC GTCATCGCAA CCGCGGTCGC CGCCAACTAC
CGGCGCGAGA AGCAGGAGCG CGGCCTGCTC GATTACGACG ACCTGATCGA TAAGACGCTG
GCGATGCTGG ACCAGACCTC GCCCGGTTGG GTGCATTACA AGCTCGACCG CGGCGTCGAC
CATGTGCTGA TCGACGAGGC GCAGGATACC AGCCCGAAGC AATGGGACAT CGTCGAGCGC
ATCATCGCGG ACTTCACCAC CGGGGAAGGG GCGCGCGAGG GCGTCAGGCG GACGGTGTTC
GCGGTCGGCG ACGAGAAGCA GTCGATCTTC TCGTTCCAGG GCGCGGCCCC GCGCGAGTTC
GACGAACGGC GAAGCAAGCT GGAGCGGAAA TTCAGGGACG CCGAACTTCC GTTTCGCAAG
GAGGATTTCA TCTACTCGTT CCGCTCGGGG AAGACGATCC TGGAGTCCGT CGATTACGTG
TTCCGCGATG CCGCGATCTA TACCAGCATC CATGCGGTCG GCGCCCATCC GGTGCATGAA
TCGCTGGCGG ACGCAGCACC GGGCGTGGTC GATCTCTGGA GTCTGGAAGA GCGAGATGCG
CGACAGCAGA TCGAGGGCTG GCGCGCGCCG TTCGATGCGG TCTCCGCAAC CAGCTCCGAG
GTCAAGCTCG CCCGCCGCAT CCGCAACGAG GTCAAGACGC TGATCGCGCA GGGCACCATG
ACGGGGCATC TGGGTGACCG CCGCCCGCTC CGCTATGGCG ACATTCTGGT GCTGGTGCGG
CGGCGCGGCA ACGCGTTCGA CGCCATCATC CAGGCGCTGA AGCAATCCGG CATTCCCGTC
GCCGGCGCCG ACCGCCTCAA GCTGACCGAG CACATCGCGA TCATCGATCT GATGAACCTC
GCCGACGCGC TGCTGTTGCC GCGGGACGAT CTGGCGCTGG CGGTGGCGCT GAAGAGTCCG
CTGTTCGGCC TTGACGACGA CGACCTGTTT GCCATCGCAC ACAATCGCAA GGGCTCGCTG
CGCGACGCAC TCGCGGATCA CGCGACGGCC AACGACAAAT TCCGCGACGC ATTCGAGCGC
CTGAAGATGT GCGAAACCCG CGCCGCACAC GAATCGCCGT TCGCGTTCTA TGCGTGGCTG
CTGGGCGGAG ATGGCGGGCG GCGGCGAATC CTGCGCCGGC TCGGCCACGA GGCCAACGAC
GCGCTCGACG AATTCCTCGA ACTGGCGCTG ACTTACGAGC GCAAGGCGCC GGCATCCCAG
CAGGGGTTCA TGGCGTGGCT GCGCGCCGCC GACACGGACG TGAAGCGCGA CATGGAGATT
TCGCGCGACG AGGTGCGGGT GATGACGGTG CACGGCGCCA AGGGGCTCGA GGCCTCCGTG
GTGTTTCTCG CCGATACCGT GACGTCGCCG GCCGATACCG AGCGCCTCAA CCTGATCCGT
ATGTCGCGCG GCAACGCGCC CGCCCATGCA GCAGGCGTCA CGGTCTGGGC CGGCAGAAAG
GCTGAAGATC CGCCTGACGT GGTGAACGCC CGCGCGGCCA TGATCGCCGA GACCGAACAC
GAATATCGCC GCCTGCTTTA CGTGGCGATG ACGCGGGCGG CGGACCGCCT GATCGTCGGC
GGCTGCAAAC CCGGCAACCG CAAGGACGTG CGCGAGCACG CATGGTACGA CCTGATCGAC
AAGGGCCTTG GCAAATCCGG CCTCGCGATG CGGGAGATCG AGACCGCCGC CGGCACGGTC
AAGCGTTTCA CGCGGCCGGG GGAAACCGAA CCGGATGCCG CCGGTCCCGC AACGCCGGTT
GCCGCCGCAC CGATCGCGCT GCCGCCGTGG CTGCACAGCA TGGCCGCGCC GGAAGCGCCC
GCCGGGCCAT CGCTGCGGCC ATCGGATGCA GATGACAACG CGCATCACCG CATCTGGCCC
GGCGAGTCCC CGGACCAGCG CCGCCGCGCG CTGTTGCGCG GCACGCTGGT GCACCGCCTG
CTGCAATCGC TGCCTGATGT GCCGGTCGAT CGCCGCGGGG ACACCGCGCT GGCCTATCTC
GGGCGCAATG CGCGCGACTG GAGCGAGGCC GAGCGCGACG CACTGGCGGC GCAGGTGCTG
GCGTTGATCG GCGACTCCCA ATTCGCGCCG GTGTTCACGG ACGGCAGCCG GGCCGAGGTG
GCGATTGCAG GACGGCTGAC GACGCGACGG GGCGATCCCG TGCTGGTGTC CGGCCAGATC
GACCGGCTCG TGGTAACGCG GGAAGCGGTT CTGATCGTGG ATTTCAAGAC CAACCATGCC
CCGCCCCGAA ACCCCGCCGA CGCACCGCCG GCCTATGTCC GACAGCTCGC GCTCTATCGC
GCGGTGCTGG CCAGGCTGTA CCCGGAATTA CCGGTCAAAG CGGCGCTGCT CTGGACCGAG
ACGCCTGAAA TGATGGAGAT TTCGGCCCTA GCGCTCGATG CCGGGCTGGA AGCGATCATC
TCGATGTGA
|
|---|
| Protein sequence | MKAPRPVHPD ASARQQRASD PATSVFVSAN AGSGKTHVLV QRVIRLLLNG VDPARILCIT
FTKAAAANMS ERVFSTLGHW VTLDDEALNA ALRDTGIAQP DAWSRQRARK LFAAALETPG
GLKVQTIHAL CTRLLQQFPF EARVPARFSV LDERDQTGMM ERASISVMLD ASQNPDSPAG
RALQYAMGAA ADTTLRDVVN QACLSRDHFM AWTEDRGIEQ AISDVADALD VDPAERVEDV
EREIVDGPNL PISEWEALAA ILETGNKSDI EQARRLREAH AMIGEAAQAD RYLDVFLTGD
SVLRKSFVTK KISDVRPDIA AMLDRESQRV IALLERRRAL TIRDRTQSLL VIATAVAANY
RREKQERGLL DYDDLIDKTL AMLDQTSPGW VHYKLDRGVD HVLIDEAQDT SPKQWDIVER
IIADFTTGEG AREGVRRTVF AVGDEKQSIF SFQGAAPREF DERRSKLERK FRDAELPFRK
EDFIYSFRSG KTILESVDYV FRDAAIYTSI HAVGAHPVHE SLADAAPGVV DLWSLEERDA
RQQIEGWRAP FDAVSATSSE VKLARRIRNE VKTLIAQGTM TGHLGDRRPL RYGDILVLVR
RRGNAFDAII QALKQSGIPV AGADRLKLTE HIAIIDLMNL ADALLLPRDD LALAVALKSP
LFGLDDDDLF AIAHNRKGSL RDALADHATA NDKFRDAFER LKMCETRAAH ESPFAFYAWL
LGGDGGRRRI LRRLGHEAND ALDEFLELAL TYERKAPASQ QGFMAWLRAA DTDVKRDMEI
SRDEVRVMTV HGAKGLEASV VFLADTVTSP ADTERLNLIR MSRGNAPAHA AGVTVWAGRK
AEDPPDVVNA RAAMIAETEH EYRRLLYVAM TRAADRLIVG GCKPGNRKDV REHAWYDLID
KGLGKSGLAM REIETAAGTV KRFTRPGETE PDAAGPATPV AAAPIALPPW LHSMAAPEAP
AGPSLRPSDA DDNAHHRIWP GESPDQRRRA LLRGTLVHRL LQSLPDVPVD RRGDTALAYL
GRNARDWSEA ERDALAAQVL ALIGDSQFAP VFTDGSRAEV AIAGRLTTRR GDPVLVSGQI
DRLVVTREAV LIVDFKTNHA PPRNPADAPP AYVRQLALYR AVLARLYPEL PVKAALLWTE
TPEMMEISAL ALDAGLEAII SM
|
|---|
| |