| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0029 |
|---|
| Symbol | nusA |
|---|
| ID | 4029796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 29886 |
|---|
| End bp | 31496 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637968563 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_575391 |
|---|
| Protein GI | 92115662 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCTG TCAGCGCCAA TAAACTCGAA CTGCTGCAGA TTGCAGATGC GGTGGCGCGG
GAAAAGTCCA TCGACCGCGG CATCGTGATC GCCGCGATGG AGGACGCCAT CGCCAAGGCG
GCGCGGGCGC GCTACGGCAG CGAGACCGAT GTTCATGCGG AGATTCACCC GAAGACCGGG
CAGCTCCAGC TCACCCGCCA CATGCTGGTG GTCGATGAGA TCGAGAATGC CGCGAACCAG
ATCTCGCTGA AGGACGCCCA GAGGGCCAAC CCGGGCGCAC AGATCGGCGA CACCATCGCC
GACACGCTGC CGCCGCTGGA ATATGGCCGC ATCGCCGCGC AGTCCGCCAA ACAGGTGATC
GTGCAGAAGG TGCGCGAGGC CGAGCGCGAC CGGCAGTATC AGGAATTCAA GGACCGCATC
GGCGACATCG TCAACGGCAT CGTCAAGCGT GTCGAATATG GCAGCGTCAT CGTCGACCTC
GGCCGCGGCG AGGCCGTGGT GCGGCGCGAC GAGATGCTGC CGCGCGAGGT GTTCCGCAAC
GGCGACCGCG TCCGCGCCTA TATTTTCGAC GTGCGGCGCG AAACCCGCGG TCCGCAGATC
TTCCTGTCGC GCACCCATCC GCAATTCATG GTGAAGCTGT TCACGCAGGA AGTGCCGGAA
ATCTACGACG GCATTGTCGA GATCAAGGCG GTGGCGCGCG ATCCCGGTTC TCGCGCGAAG
ATCGGCGTGA TTTCCCGGGA TTCCTCGGTC GATCCCGTTG GCGCCTGTGT CGGCATGCGC
GGCTCGCGGG TTCAGGCGGT CGTCAACGAA CTGCAGGGCG AGAAGATCGA CATCATACCG
TGGTCGCCGG ACATCGCGAC GTTCGTCGTC AACGCGCTGG CGCCGGCGGA AGTCGCGAAG
GTCGTGATCG ACGAGGACCG TGAGCGGATC GAGGTCGTGG TCCCCGACAC CAACAACCAG
TTGTCGCTGG CGATCGGACG GCGCGGACAG AACGTGCGCC TCGCCTCGCA ACTGACCGGC
TGGGACATCG ACATCCTGAC CGAGCAGGAG GAATCGGAGC GGCGCCAGGC CGACTTCGAG
AACGCGACCC GCATGTTCAT GGAAGCGCTC AACGTCGACG AGGTCGTGGG CCAGTTGCTG
GCGTCGGAAG GGTTTATGTC GGTTGAAGAG CTGACGCTGG TCGAAACGCG GGAACTCGCC
GGCATCGAGG GATTCGACGA CGAAACCGCA AACGAGCTGC AGAGCCGCGC CCGCGAATAT
CTGGAGCAGC TCGAGGCCGA ACTGGACAAC AGGCGCAAGG AGCTTGGCGT GGACGATGCC
CTGAAGACGG TGCCCGGCGT GACCTCGAAG ATGCTGGTGA AACTCGGCGA GAACGAGGTC
AGGACCGTCG AGGATCTGGC CGGCTGCGCC ACCGACGATC TGGTCGGTTG GACCGAGCGC
AAGGACGGCG AAGCGGTCAA GCACGCCGGC TATCTCGACG GCATCGAGGT CTCGCGCGAG
GACGCCGAGG CCATTATCAT GCAGGCGCGC CTGATCGCCG GCTGGATCAC CGAAGCCGAC
CTTGCGAAAT CGGCGGAGGA AGCCCCCGCC GCCGAAGATC AGCCGGCTTG A
|
|---|
| Protein sequence | MAAVSANKLE LLQIADAVAR EKSIDRGIVI AAMEDAIAKA ARARYGSETD VHAEIHPKTG
QLQLTRHMLV VDEIENAANQ ISLKDAQRAN PGAQIGDTIA DTLPPLEYGR IAAQSAKQVI
VQKVREAERD RQYQEFKDRI GDIVNGIVKR VEYGSVIVDL GRGEAVVRRD EMLPREVFRN
GDRVRAYIFD VRRETRGPQI FLSRTHPQFM VKLFTQEVPE IYDGIVEIKA VARDPGSRAK
IGVISRDSSV DPVGACVGMR GSRVQAVVNE LQGEKIDIIP WSPDIATFVV NALAPAEVAK
VVIDEDRERI EVVVPDTNNQ LSLAIGRRGQ NVRLASQLTG WDIDILTEQE ESERRQADFE
NATRMFMEAL NVDEVVGQLL ASEGFMSVEE LTLVETRELA GIEGFDDETA NELQSRAREY
LEQLEAELDN RRKELGVDDA LKTVPGVTSK MLVKLGENEV RTVEDLAGCA TDDLVGWTER
KDGEAVKHAG YLDGIEVSRE DAEAIIMQAR LIAGWITEAD LAKSAEEAPA AEDQPA
|
|---|
| |