| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_3116 |
|---|
| Symbol | |
|---|
| ID | 4028757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 3470824 |
|---|
| End bp | 3471573 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637968330 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_575159 |
|---|
| Protein GI | 92115231 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.553412 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCA CCGCCCTCAC TTTCGATCTC GACGACACCC TCTGGGACAA CCGCCCCATT
CTCGAACGCG CCGAGGCCGA ACATTACCAG TGGCTCAGCG AGGCCATCGC CGCCGCCCAG
ACGTCACCGC AGACATCCTT CGGGGACTGC TATCCCCTGA GCGCTTACCA GCAGCATCGC
GCCGACGTGG CGCGTCGTCA TCCGCTCAAG CGCGGTGATT TCACGTGGAT TCGCGAACGT
GCGCTGTTCG AGCTTGTAGA GGCCTACGGG CTACCCCGAC TCCAGGCCCG CCTCTGGGCC
GCGCATGCCA TCGCCCACTT CCTCGACCTG CGTCACGACC TCACGCCCTA CCCGGACGTC
GTGCCCCTGC TCGACGCCCT GCGGCAGCGC TATCGTCTCG CCGCAATCAC CAACGGCAAC
GCCGACCTCA AACGGCTGGC GCTGGCCGAA CACTTTCCGG TGATGATCGC GGCGGGAGAA
CTGCACGCTC CCAAGCCCGA CCCGCGTGCC TTTCTCGCGG CGCTGGCACG CCTCGGCGCC
ACGCCATCGC GCGCCCTGCA TGTCGGAGAC TCCTGGCGGG AAGACGTGCT GCCGGCGCAG
CGCCTGGGCA TGCAGGTGGC CTGGGTCGAT GCCAAGGACG AGGGCCCCCG CGCGCTGCCG
CCCGGGGTCC ACCGTCTCGC CCATGTACGC GAGCTGCCGG CCCTGCTCGA CCGCCTGACC
ACGCAGGACA GCGCGCGCCA GGGGGGCTGA
|
|---|
| Protein sequence | MAITALTFDL DDTLWDNRPI LERAEAEHYQ WLSEAIAAAQ TSPQTSFGDC YPLSAYQQHR
ADVARRHPLK RGDFTWIRER ALFELVEAYG LPRLQARLWA AHAIAHFLDL RHDLTPYPDV
VPLLDALRQR YRLAAITNGN ADLKRLALAE HFPVMIAAGE LHAPKPDPRA FLAALARLGA
TPSRALHVGD SWREDVLPAQ RLGMQVAWVD AKDEGPRALP PGVHRLAHVR ELPALLDRLT
TQDSARQGG
|
|---|
| |