| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_3112 |
|---|
| Symbol | |
|---|
| ID | 4028753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 3466985 |
|---|
| End bp | 3468241 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637968326 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_575155 |
|---|
| Protein GI | 92115227 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.507719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCATT TCAATTACCG CGACGGCCAC CTGCATGCCG AGAACGTACC GCTGACCGAC
ATCGCCGAGC GCTTCGGCAC GCCGTGCTAC GTGTATTCGC GGGCGACCTT CACACGTCAC
TTCAAGGCCT ACAGCGACGC ACTCGGCGAT CATCCCCATC TGATCTGCTA CGCGGTGAAG
GCCAATTCCA ACCTCGCTGT GCTCGACCTG CTGGCGCGTC TCGGCGCCGG CTTCGACATC
GTCTCCCGGG GCGAGCTCGA GCGCGTGCTG GCCGCCGGCG GCGATCCCGC CAAAGTGGTA
TTTTCCGGCG TCGCCAAGCA GGCCGGCGAA ATGGCCCGCG CGCTGGAAGT GGGCATCAAG
TGCTTCAACG TGGAGTCCCT GCCGGAACTC GAGCGCCTGA ACCAGGTGGC GGGCGAATGC
GGCCAGGTGG CAAGGGTCTC GCTGCGCGTC AATCCCGACG TCGATGCCAA GACCCATCCG
TACATCTCCA CCGGCCTCAA GGCCAACAAG TTCGGCATCG CCGTCGACGA GGCCTTCGCG
GTCTATCAGC GCGCCGCCGA GCTGCCGAAC CTCGAGATCG TCGGCCTGGA TTGCCATATC
GGTTCGCAAC TGACCGAGCT GGCGCCTTTC CTCGATGCCC TGGACCGTCT GCTGATACTC
CTCGACCGTC TGAACGAGGC GGGCATTACC ATCGAACATC TCGATCTGGG CGGCGGCCTC
GGCGTGCCCT ATCAGGACGA GCAGCCGCCG GCCCCCTACG ACTATGCCCG CGCCCTGCTC
GAGCGACTCG ACGGCCGCGA CCTGACGCTG CTGTTCGAGC CGGGGCGCTC GATCGCCGCC
AATGCCGGCG TGATGCTCAC CCGTGTCGAA TACCTGAAGC CCGGCGAGAC GCAGCACTTC
GCCATCGTCG ATGCCGGCAT GAACGATCTG ATTCGCCCCG CGCTGTACCA GGCGTGGCAG
CGCATCGTAC CGGTCGATAC CCGTCAGGCG CGCGAGACGG CGGTCTACGA CGTCGTCGGC
CCGGTCTGCG AAACCGGCGA CTTCCTGGGC AAGGCACGTG AACTGGCCAT CGCGCCGGGC
GACCTGCTCG CGGTACGCTC GGCCGGGGCC TACGGCTTCG TGATGGCCTC CCACTACAAC
AGCCGCCCAC GCCCCGCCGA ACTCATGGTC GATGGCGACA ACGTGCAGGT GGTGCGCGAG
CGCGAGACAC TCGATGCCTT GTGGGCCGGC GAACACCGTC TGGCGGAGAC GTCCTGA
|
|---|
| Protein sequence | MDHFNYRDGH LHAENVPLTD IAERFGTPCY VYSRATFTRH FKAYSDALGD HPHLICYAVK
ANSNLAVLDL LARLGAGFDI VSRGELERVL AAGGDPAKVV FSGVAKQAGE MARALEVGIK
CFNVESLPEL ERLNQVAGEC GQVARVSLRV NPDVDAKTHP YISTGLKANK FGIAVDEAFA
VYQRAAELPN LEIVGLDCHI GSQLTELAPF LDALDRLLIL LDRLNEAGIT IEHLDLGGGL
GVPYQDEQPP APYDYARALL ERLDGRDLTL LFEPGRSIAA NAGVMLTRVE YLKPGETQHF
AIVDAGMNDL IRPALYQAWQ RIVPVDTRQA RETAVYDVVG PVCETGDFLG KARELAIAPG
DLLAVRSAGA YGFVMASHYN SRPRPAELMV DGDNVQVVRE RETLDALWAG EHRLAETS
|
|---|
| |