Gene Csal_2835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCsal_2835 
SymbolsecD 
ID4028521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChromohalobacter salexigens DSM 3043 
KingdomBacteria 
Replicon accessionNC_007963 
Strand
Start bp3163890 
End bp3165740 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content65% 
IMG OID637968043 
Productpreprotein translocase subunit SecD 
Protein accessionYP_574880 
Protein GI92114952 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCAACC GTTATCCCCT GTGGAAGTAT CTGCTGATAC TCGTCGTACT CCTCGTCGGC 
CTCATCTACG CGTTACCCAA TCTTTACCCC GCCGACCCCG CCGTTCAGAT CAGCAGCACC
GCCAGCGGCG CCGCGCTCGA CCAAGAGCGT CTCGACCGCC TGACTCAAGC GCTCGAGGAC
AAGGACATCG CCATCAAGCA AAGCGAGCTG GATGGCAACA GCGCCCTGAT TCGTCTCGAA
CGGGCCGGCC AGCAGGTCGC CGCCCGCGAG ATCATCGACG AACGCCTGGG CGACGCCTAC
ACCGTGGCAC TCAACCTGGC CGACGCCACC CCCGGCTGGC TCCAGGCGCT TTCCGCCACG
CCCATGAAAC TGGGGCTCGA CCTGCAGGGC GGGGTGCACT TCCTGCTCGA GGTGGACATG
GATGCGGCCG TCGAGCAGCG CCTCGAAGCC AATGCCAGCG CCGTGCGCGA CCTGCTTCGC
GACGAGCGCA TCCGGTATCG CGATACCAGC ATCGACGGAC GCGCGATCAC CTTCCAGTTC
GCCAACGCCG ACGACCGCAA CGCAGCGCGT GGCTTGATCA CCGACCAGTT CCCGGATTTC
GAATACAGCA CGCCCGACAC CGAACGTGGC GCCAGCCTGA CGATGACGTT CACCGATCAG
GCCGTGCAGG ACCTGCAGGA TTATGCCGTC AATCAGAACC TGACCACGAT CCGCAACCGT
GTCAACGAAC TCGGCGTCTC GGAGCCTCTG GTGCAGCGCC AGGGCCCCAG CCGCATCGTC
GTCGAGCTAC CCGGCGTGCA GGACACCGCC GCCGCCAAGC GCATCGTCGG CGCCACCGCC
AATCTGGAAT TCCGCCTGGA GGCACGGCCG GACACGCCGG AGCGCGAGAT CGAAACGCTC
CCCTTCCGCA ATGATGAGGG CCGCAGCGCG GACCTGATGC GTGACATCAT CGTGACGGGC
GACCATGTGT CCAGCGCCAG CCGGAGCTTC GACGAAAACA ACCGTCCGCA GGTCAACATC
AACCTCGACG GTACCGGCGG CTCGATGATG AGTCGTGCCA CGCGCGCCAA TATCGGGCGC
AACATGGCGG TCGTCTTCAT CGAGCACAAG ACCCGCACCC GCACGGTCAT GGAAGACGGC
GAGGAAGTCG AAAAGCGCGA GGCCTATACC GAGCGCGGCA TCATCAGCCT GGCCACCATC
CAGAGCACGC TGGGCAACCG TTTCCGCATC ACCGGACTCG AATCCGCCAG CGAGGCCGGT
GACCTGGCCC TGCTGCTGCG CTCCGGGTCT CTCGCGGCAC CGATCTACTT CGCCCAGGAG
CGCACCATCG GCCCGAGCCT GGGGGCGCAG AACATCGCCC AGGGCATCAT GTCGGTGGAA
GTCGGCCTGC TGCTCGTGGT GCTGTTCATG CTGGCGCGCT ACAAGGCCTT CGGTGTGGTC
GCCAACGTCT CGCTGGGTCT GAACCTGGTA CTGCTGGTCG CCGCCATGTC ATTGCTCGGC
GCCACGCTGA CCCTGCCCGG CATCGCCGGC ATCGTCCTGA CCCTGGGCAT GGCGGTGGAT
GCCAACGTCC TGATATTCGA GCGAATACGC GAGGAGCTGC GCGCCAAGAT GCCGGTGCAA
CAGGCCATTC ATACCGGCTT CGAGCGTGCC TTCACCTCGA TCGTCGATGC GAACATCACC
ACCTTGCTGG TCGCGGTCAT CCTGTTCTCG ATCGGCACCG GCCCGGTCAA GGGCTTCGCC
GTAACGCTGT CGCTGGGCAT CCTGACGTCG ATGTTCACCG CCATCATGGT GTCGCGCGCC
ATGATCAACC TCACCATCGG CGGGCGCCCG CTGAAGAAAA TCTGGATCTG A
 
Protein sequence
MLNRYPLWKY LLILVVLLVG LIYALPNLYP ADPAVQISST ASGAALDQER LDRLTQALED 
KDIAIKQSEL DGNSALIRLE RAGQQVAARE IIDERLGDAY TVALNLADAT PGWLQALSAT
PMKLGLDLQG GVHFLLEVDM DAAVEQRLEA NASAVRDLLR DERIRYRDTS IDGRAITFQF
ANADDRNAAR GLITDQFPDF EYSTPDTERG ASLTMTFTDQ AVQDLQDYAV NQNLTTIRNR
VNELGVSEPL VQRQGPSRIV VELPGVQDTA AAKRIVGATA NLEFRLEARP DTPEREIETL
PFRNDEGRSA DLMRDIIVTG DHVSSASRSF DENNRPQVNI NLDGTGGSMM SRATRANIGR
NMAVVFIEHK TRTRTVMEDG EEVEKREAYT ERGIISLATI QSTLGNRFRI TGLESASEAG
DLALLLRSGS LAAPIYFAQE RTIGPSLGAQ NIAQGIMSVE VGLLLVVLFM LARYKAFGVV
ANVSLGLNLV LLVAAMSLLG ATLTLPGIAG IVLTLGMAVD ANVLIFERIR EELRAKMPVQ
QAIHTGFERA FTSIVDANIT TLLVAVILFS IGTGPVKGFA VTLSLGILTS MFTAIMVSRA
MINLTIGGRP LKKIWI