| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_2477 |
|---|
| Symbol | |
|---|
| ID | 4026615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 2783855 |
|---|
| End bp | 2785135 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637967684 |
|---|
| Product | TRAP dicarboxylate transporter- DctM subunit |
|---|
| Protein accession | YP_574523 |
|---|
| Protein GI | 92114595 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.984848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACTCA TGATTCTGTT CGGCCTGTTC TTTCTGGGTC TCATCGTAGG TGCGCCAGTG
GCCTTCGCTG TCGGTCTGGC TGCGGCGGGA ACCTTTCTCT ACGAAGGGCT GCCACTTTTC
GTGGCTTTTC AACGTATATT GTCGGGAATC TCGGTCTTTT CCTTACTGGC CATACCGTTT
TTCATTTTTG CCGGCGAACT GATGCTGCAT GGGGGCATAT CCACTCGCCT GGTACGCCTG
GCATCCGCTG CCGTAGGGCG TGTACGGGGT GGTCTGGGAA TGGTCAATGT CAGCTCCTCG
ATGCTTTTCG GAGGCATCTC GGGGTCTGCA GTCGCTGACA CATCCGCGCT GGGTTCGATC
CTCATCCCGG TCATGAAAGA GAAAGGTTAC GACGCCGATT ACGCGGTCAA TGTCACGGTT
ACCTCGTCGG TTGCGGGTGT CGTGATTCCT CCCAGTCATA ACATGATTCT CTATGCCGTC
GCCGCCGGGG GTGGCATCTC GATCACCCAA CTGTTCATTG CCGGTATCGT GCCGGGGGTG
CTGATGTGTC TGGCATTGGC CGTGGCTGCA TATGTCGTGG CGGTCAAGCG TGGTTACAAA
GGCGAGGCAT TTCCCGGGTG GTCGGCATTG GTGCTCAGTT TCGTGGCTGC GCTGCCCGGT
CTGATGACGG CAGTGATCAT TGTCGGCGGG GTGCTGTCTG GCGTTCTGAC GGTCACCGAG
TCCGGTGCCT TCGGCGCTAT CTACGCTATC GTCGTCACGG GACTGGTGTA CCGTGAATTG
CGCTGGGAAC CGTTCAAGCA GGCGGTCTAC CAGGCGGTAC GCACGACCTC GCTGGTGATG
ATCCTGGTGG GATGTGCCTC GGCATTCTCG TACCTGCTGG CACTCTATAG CGTACCGCAG
CTGCTGACCG ACGCACTGTT GAGTATCTCC GAGAATCCTT ACGTGATCCT GCTGATGCTC
AACCTGATAT TGCTGGGTCT CGGCATGATC ATGGACATGG CGGCACTGAT CCTGATCTGC
ACGCCGATAT TCCTGCCGGT TGCCGAAGAG TTCGGCATGG ACCCCATTCA GTTCGGCATC
ATCATGATGA TGAACCTTGG GCTGGGACTA TGTACTCCCC CGGTAGGGTC TTGTCTTTTC
GTGGGTAGCG TTATCGGCAA GATCAAGATC GAACAGGCGG TACGTACCAT CTGGCCGTTC
TATCTAGCGC TGTTTGCGGT GTTGATGCTG GTGACCTACG TGCCGGCGAT ATCGCTGACG
CTGCCCGGCT TCTTCCAGTG A
|
|---|
| Protein sequence | MGLMILFGLF FLGLIVGAPV AFAVGLAAAG TFLYEGLPLF VAFQRILSGI SVFSLLAIPF
FIFAGELMLH GGISTRLVRL ASAAVGRVRG GLGMVNVSSS MLFGGISGSA VADTSALGSI
LIPVMKEKGY DADYAVNVTV TSSVAGVVIP PSHNMILYAV AAGGGISITQ LFIAGIVPGV
LMCLALAVAA YVVAVKRGYK GEAFPGWSAL VLSFVAALPG LMTAVIIVGG VLSGVLTVTE
SGAFGAIYAI VVTGLVYREL RWEPFKQAVY QAVRTTSLVM ILVGCASAFS YLLALYSVPQ
LLTDALLSIS ENPYVILLML NLILLGLGMI MDMAALILIC TPIFLPVAEE FGMDPIQFGI
IMMMNLGLGL CTPPVGSCLF VGSVIGKIKI EQAVRTIWPF YLALFAVLML VTYVPAISLT
LPGFFQ
|
|---|
| |