Gene Csal_2010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCsal_2010 
Symbol 
ID4027094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChromohalobacter salexigens DSM 3043 
KingdomBacteria 
Replicon accessionNC_007963 
Strand
Start bp2270477 
End bp2272201 
Gene Length1725 bp 
Protein Length574 aa 
Translation table11 
GC content64% 
IMG OID637967205 
Productdiguanylate cyclase with PAS/PAC and GAF sensors 
Protein accessionYP_574060 
Protein GI92114132 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGCCGCT CACGGATGCC GGAAGCCGAA GCCCAGGAAG CCGAGCGCGT CGCCGCGCTG 
CATCGGCTGG GCATCTACGA AACGTCCTGC GATCCGGAGC TGAACCGGCT CATGACCATG
ATCGGGGAAC TCTTCGACGT TCCCTGCGCC ATGATCAATC TCGTCGACCG GGAACGGACC
TGGTGCCTGG CGAGTTCCAG CGACCTCGCC GCGCCGCCGC GTCGCGAGGA TTCGCTCTGT
GCCTTCACGG TGGATCATGA TACGGCGTTG TTCATCGAGG ACATGCGCGA TGCCGATGGA
TTTCGCGAAC ACCCGCTGGT GAGGGACACG CCTTTCATCC GCGCCTTCGC CGGCGAAAGA
ATCCTGTCGT TGAGCGGCCA TCTGCTGGGC ACGCTGTGCC TGGTCGATAT CCGCCCACGG
GTTTTCGACG CCGAGAGCCG GCAACGCCTG GCCGACCTGG CCAAGCTCGT CTCGCTGCGC
CTCAACCAGC GCCTGATCGA CGAGCAGCGC CATACCGCCG ATGCGATGAT CGATCAGCAG
ACCCAGCTGC TCGACCATCT ACCGGACGGG ATCGTGCTGC TCGACGACCG CCGCGTCGTG
CATTACGCCA ACGCCGCCGC CCAGCGCCTG CTGGGCGGCG CCTCTCATGA CGTCAAGGGC
TGTGCCTTCG ACACCCTCGT CGCACAGCCC GAAGGGCACG ATTTCGCCAC GGCGTCACGC
ACCGGCTCGC CACTCGAGAT CCATGCACTG CCCAGGTTCC AGGGGTTCGA GGCCTTGCAG
CTGGGCGACC GCGCCTCGCT CGTGGGCACG CACCAAGCCC TGCAACGCTT GCGCAGTCTG
GTGGATGCCT GGCCCGATGG CGTACTGATC TGCGATTACG ACAACCTGCG CATCGTCGAG
TGGAACATCG CCGCACGCCG TTTGCTAGGC ACGCAGGCAT CATCGCTCGA AGGCACTCGT
CTTCCCCAGT GGTTCCTGTC GGGCGACCGG CGCACGCTGC AGCGGCGCAT CCGTGCGGAG
CTCGGTGAAG GGGATGGCAC CCTGCGCCAT AACGCCACCT TGCACAACGA CACTCCGGTC
GAAGTCACGC TGGTGCCGAT GCAGGACGCC AGCGAGACAT CGTTGATCGT CGTCCTGCGC
GACCGCAGTC CTTATCTTCA GCACCTGCGC ACGGTCACGC GCAAGCTTGC CAAGGCCGAG
GAAATGATCA GCCAGGATGC CCTGACCGGC CTGCTCAACC GCTTCGGTTT CAAGCAGGCC
ATCGACGAGT TCATGGTCGA GGCCGAGCGC GGCGTCCCCT TCGCGCTGCT CATCGCCGAT
ATCGATCATT TCAAGGATAT CAACGATACC TATGGCCACC AGCTAGGCGA CGAGGCGCTC
AAGATCGTCG CCAGCCGGCT TGCCGAGCAG CTTCGTGATG GCGATGCCGT GGCACGTTAT
GGCGGCGAGG AATTCTGCAT GCTGATGACG GTTCCCGAGG ACCGGGTCGT GGAAGTGGCC
GAGCGAATCC GGCGGACCGT CGCCGCCACG CCCGTGACAC TCGATGACGG CAAGGAACTC
GCGCTCACGA TTAGTATCGG CGCGACGTAC CATACCCCCG GCCTGGACGA GGACAGCATG
TTCGAACGCG CCGACGAAGC GCTCTATGAA GCCAAGGAGT ACGGACGCAA CCGTACCGTC
ATGCTAAACG CCGCAACGCC CAGGGCGCGT GACGAAGAAG AGTGA
 
Protein sequence
MCRSRMPEAE AQEAERVAAL HRLGIYETSC DPELNRLMTM IGELFDVPCA MINLVDRERT 
WCLASSSDLA APPRREDSLC AFTVDHDTAL FIEDMRDADG FREHPLVRDT PFIRAFAGER
ILSLSGHLLG TLCLVDIRPR VFDAESRQRL ADLAKLVSLR LNQRLIDEQR HTADAMIDQQ
TQLLDHLPDG IVLLDDRRVV HYANAAAQRL LGGASHDVKG CAFDTLVAQP EGHDFATASR
TGSPLEIHAL PRFQGFEALQ LGDRASLVGT HQALQRLRSL VDAWPDGVLI CDYDNLRIVE
WNIAARRLLG TQASSLEGTR LPQWFLSGDR RTLQRRIRAE LGEGDGTLRH NATLHNDTPV
EVTLVPMQDA SETSLIVVLR DRSPYLQHLR TVTRKLAKAE EMISQDALTG LLNRFGFKQA
IDEFMVEAER GVPFALLIAD IDHFKDINDT YGHQLGDEAL KIVASRLAEQ LRDGDAVARY
GGEEFCMLMT VPEDRVVEVA ERIRRTVAAT PVTLDDGKEL ALTISIGATY HTPGLDEDSM
FERADEALYE AKEYGRNRTV MLNAATPRAR DEEE