Gene Csal_1945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCsal_1945 
Symbol 
ID4027185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChromohalobacter salexigens DSM 3043 
KingdomBacteria 
Replicon accessionNC_007963 
Strand
Start bp2200030 
End bp2201367 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content68% 
IMG OID637967141 
Productlytic transglycosylase 
Protein accessionYP_573996 
Protein GI92114068 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.106918 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTAC GATCGAGTCG CCGCCAGGCG CTACGTTTGG GTCACGTAGC CCTGGCGGGA 
GGACTGTTAT TGAGCGCATT GTCGCTTCCC GCCGCGAAGG CCGCCTCCGG CGAGGCCACC
GGCACCTCGG CAGCCACGAC TACCTTCTGG CAAGCCCTGG TATTGCAGCG CGCCCCGCAG
GCCGATGCCT GGACGCGCCT CAAGCAGGGC TTCGGCCTGC CGCACGATAT TCAGCATCCG
CGTGTCGCGA AATGGCTCGA CTGGTATGCC GCGCACCCCG AGCACGTCGA GCAGGTCGCC
GCCAAGGCGC GCCCCTGGCT GCGCTGGGTG ACGCGTCAGC TCGAGGCTCG CGACATGCCC
ACCGAAATCG CCCTGCTGCC TTTCATCGAA AGCGCCTACG ACCCCACGGC CCGCCACCCC
GGCGGTGCTT CCGGGCTCTG GCAGTTCATG CCCGGCACCG GCGAAGCCAT GGGGCTCGCC
GAGACCTGGT GGTACGACGG GCGCCGCGAT GTCGTCTCTT CGACGAATGC GGCCCTCGAC
TACCTGCAGA CGCTCGCCGA CCAGTGGTAC GAAGGCAACA TGGAACTCGC CCTCGCCGCC
TACAATGCCG GCGCCGGCAC CGTCAATCGC GCGCGTGAGC GAGCCGCCGC GCAGGGCAAG
CCCATCGACT ACTGGCACCT CTCGCTGCCC GCCCAGACCA TGGACTACGT GCCCAAGCTT
CTCGCCTTGT CGGCGGTCAT CTCGGACCCC CAGCGGTACG CCATCGACCT GCCGAGCATT
CCCGATCGAC CGGCCATCGC CAGGGTCACC GCCGAGGGGC AACTGTCGCT GGCCGACGCC
GCCCAGCTCG CCGATGTCAG CGAAGCGCGG CTGCAAGCCC TCAACCCCGG CCTGCGGCGT
GGTGCCACGC GCCCCGACAG GAACGCGCAA TTGATCGTGC CCGCCGATCG CCGGCAGCGT
TTTCTCGCCA ATCTCGATAC GCTGCCCGCC GAAAAACGGC GTACCCGGAC GCACTACGTG
GTCCAGTCCG GCGACACGCT GTCCGGCATT GCCGCGCGCC ATGACATCCC GGTGGGCGTA
CTGCGTCGGC AGAATGGGAT CAGCGGCAAT ATGCTGCGCG TCGGTCAATC CCTGGTCATT
CCGGGCGCGT CGAGCCGTGC ACGCCTGGCC AGCCGTGAGG CCACCCAGCA AGTCCGCGTC
AAGCCGGGTG ACAGCCTCTC GCGTATCGCG GCACGCCATG ATGTCAGCGT CGACGACCTG
ACACGCTGGA ATCAGATACA GCGCGACGAT TATCTCCAGC CCGGACAGCG TCTCACGCTT
CGCACCCCGG CGCGTTGA
 
Protein sequence
MKVRSSRRQA LRLGHVALAG GLLLSALSLP AAKAASGEAT GTSAATTTFW QALVLQRAPQ 
ADAWTRLKQG FGLPHDIQHP RVAKWLDWYA AHPEHVEQVA AKARPWLRWV TRQLEARDMP
TEIALLPFIE SAYDPTARHP GGASGLWQFM PGTGEAMGLA ETWWYDGRRD VVSSTNAALD
YLQTLADQWY EGNMELALAA YNAGAGTVNR ARERAAAQGK PIDYWHLSLP AQTMDYVPKL
LALSAVISDP QRYAIDLPSI PDRPAIARVT AEGQLSLADA AQLADVSEAR LQALNPGLRR
GATRPDRNAQ LIVPADRRQR FLANLDTLPA EKRRTRTHYV VQSGDTLSGI AARHDIPVGV
LRRQNGISGN MLRVGQSLVI PGASSRARLA SREATQQVRV KPGDSLSRIA ARHDVSVDDL
TRWNQIQRDD YLQPGQRLTL RTPAR