Gene Csal_1626 details

Gene Information

• Locus tag: Csal_1626
• Symbol: algU
• ID: 4028230
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chromohalobacter salexigens DSM 3043
• Kingdom: Bacteria
• Replicon accession: NC_007963
• Strand: +
• Start bp: 1847586
• End bp: 1848191
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637966815
• Product: RNA polymerase sigma factor AlgU
• Protein accession: YP_573678
• Protein GI: 92113750
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.909239
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCACAA GGGAAACCGA TCACCAGCTC GTTGAGCGTG CCCAGAAGGG AGACACCCGC 
GCTTTCGACC TCCTGGTCAA GAAATATCAG CACAAGATCA TCGGACTGAT CGGCCGCTAT 
GTGCACGATC CCGCCGAAGT GCAGGACGTG GCGCAGGAGG CTTTCATCAA AGCATATCGT 
GCGCTCGGCA AGTTTCGCTC TGAAAGCGCC TTTTACACCT GGATGTACCG TATCGCGATC 
AACACCGCCA AGAACCATCT CGTCTCGCGC GGTCGCCGAC CGCCGGGCAG CGACATGGAC 
ATCGTCGATG CCGAGGTGCT CGATCACAGC GGTCGCCTGT CCGATATCGA TACCCCCGAG 
GCGGCGCTGC AGCGCGACCA GCTCGAGGCA GTGGTGTTCG AGGTGATCGA GAACCTGCCG 
GAAGACCTGC GCACCGCGAT CACGCTGCGG GAGATGGACG GTCTCGCCTA CGAGGACATC 
GCCAACATCA TGCAGTGTCC GGTCGGCACG GTACGCTCGC GCATCTTTCG CGCGCGCGAA 
GCGGTGGACA AGGCCATCGC CCCGTTGTTG AGCACGTCGA ACAAGGCGGA CGCCGCCGTC 
GAGTGA 

 

Protein sequence

MGTRETDHQL VERAQKGDTR AFDLLVKKYQ HKIIGLIGRY VHDPAEVQDV AQEAFIKAYR 
ALGKFRSESA FYTWMYRIAI NTAKNHLVSR GRRPPGSDMD IVDAEVLDHS GRLSDIDTPE 
AALQRDQLEA VVFEVIENLP EDLRTAITLR EMDGLAYEDI ANIMQCPVGT VRSRIFRARE 
AVDKAIAPLL STSNKADAAV E