| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_1055 |
|---|
| Symbol | |
|---|
| ID | 4027843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 1190847 |
|---|
| End bp | 1192439 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637966232 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_573111 |
|---|
| Protein GI | 92113183 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAA ACGCTGCCAT TCGGATGGCG CCGCTTTCTT CCCGGCCGCT CGCATCTCGG
GCGATGGGCG AAGACGCGAA CCATGCCCTG TTCATGCCGC GCAATGCCGA TGCCTACCGT
CAGGGCATGC AGCGCTGCAT CGAACTCGTG CAACGCAAGT TGACCGAGAC CGGCCAGCCG
TTCTCGGGAA TTCTGCCCAG CGAGATGCAG CGACGCTTCG AGGGGCTGGA TCTGAACCAT
CGGCTCGACG ACCTCGACGC CGTGCTGGCG GAAGTCGAAC GGCTGTATCT CGACGACGCA
GTGTATTTTC ATCATCCGCG TTATGTCGCG CACCTCAACT GTCCGATCAC CTTGGCATCG
ATTCTCGCCG AAGCGATCGC CACCCCGATC AACACCGCCG TCGAGACCTG GGACCAGAGC
GCCGGCGGCA CCTTCATCGA GCAGGCGCTG ATCGACTGGA CGGTCCGCCG TATCGGCCTG
GGCGATGACG CGGACGGTGT CTTCACCAGC GGCGGCACCC AGTCCAACCT GATGGCCCTG
TTGATCGCGC GCGATCATCG CTGCGCAGCC CTCGACGGGC ATCAGGGCAA TCGCGAACAC
GGCCTGCCCG CCGACGCGGC CAGGTTGCGC ATCTTCGCCT CCGAGGCGAG CCACGTCAGT
CTGCAAAAGG CCGCCGCGTT GCTGGGGCTG GGGCACCGTG CCGTGGTGCC GATTCCCTGT
GACGACCGCT ACCGCATGGA CACCGGGGCG CTGGCACGCA CCCTGGCCGA GAGCCGGCAA
GCAGGAACGA TTCCGATGGC CGTGGTCGCC ACGGCCGGCA CCACGGATTT CGGCAGCATC
GACCCGCTGG CGGATATCGC CGCGCTCTGC CGCCGGCATG GGGTGTGGCT GCACGTCGAT
GCCGCGTACG GCGGCGGCCT GCTGACATCG CCACGGCACC GCCACTGGCT GGCCGGTATC
GAACAGGCGG ACTCGGTCAG CGTCGACTAC CACAAGTCCT TCTTTCAGCC GGTCAGTTGC
AGCGCCTTCA TGGTCGCCGA ACGCCAGAGG CTCGGCTATG TCACCCATCA CGCCGATTAC
CTGAATCCTG CCGGCCGGCA CGACGACGCA CCGCCGGACC TGGTCGACAA GAGCCTGCAG
ACCACGCGCC GCCTCGACGC CCTGAAGCTA TGGATGACCC TGCGCCTGCT GGGGCCGGAT
GCCCTGGGCG AGCTGTTCGA TCGTGTCATC GCGCTGACCC GCGAGGCGTA CCATCTGCTG
CGGACCGCGC CGGACATCGA GGTGGTCACG GCACCACAGC TCACCACGCT GGTATTTCGC
TACCGACCGC GTGGCCACGA CCTGGACGAC GCCAGCCTGG ATGCGCTCAA CACCCATATC
CGACAGGCCC TCTCGCGCCA CGGCGAGGCG GTCGTCGCGG CGACGCGTGT CCGGGGGCGC
CGATACCTCA AGTTCACGCT GCTCAACCCG GAGACCGGCA TCGACGATCT GGCCACGGTC
GTGGAGCGCC TTCAGGCCCA TGGCGCCGAC TTCCTGACGC GCGACGATGC CGCGTCACCC
AGGCGGCATG ACCTCGCTGC CGCTTTCTCC TAA
|
|---|
| Protein sequence | MSQNAAIRMA PLSSRPLASR AMGEDANHAL FMPRNADAYR QGMQRCIELV QRKLTETGQP
FSGILPSEMQ RRFEGLDLNH RLDDLDAVLA EVERLYLDDA VYFHHPRYVA HLNCPITLAS
ILAEAIATPI NTAVETWDQS AGGTFIEQAL IDWTVRRIGL GDDADGVFTS GGTQSNLMAL
LIARDHRCAA LDGHQGNREH GLPADAARLR IFASEASHVS LQKAAALLGL GHRAVVPIPC
DDRYRMDTGA LARTLAESRQ AGTIPMAVVA TAGTTDFGSI DPLADIAALC RRHGVWLHVD
AAYGGGLLTS PRHRHWLAGI EQADSVSVDY HKSFFQPVSC SAFMVAERQR LGYVTHHADY
LNPAGRHDDA PPDLVDKSLQ TTRRLDALKL WMTLRLLGPD ALGELFDRVI ALTREAYHLL
RTAPDIEVVT APQLTTLVFR YRPRGHDLDD ASLDALNTHI RQALSRHGEA VVAATRVRGR
RYLKFTLLNP ETGIDDLATV VERLQAHGAD FLTRDDAASP RRHDLAAAFS
|
|---|
| |