| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0976 |
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| Symbol | |
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| ID | 4026199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chromohalobacter salexigens DSM 3043 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007963 |
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| Strand | + |
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| Start bp | 1093279 |
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| End bp | 1095123 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637966153 |
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| Product | sigma 70 (RpoD) |
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| Protein accession | YP_573032 |
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| Protein GI | 92113104 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.741163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGGAA ATACGCAGCA GTCACGTCTG AAGGAGTTGA TCGCCCAGGG TAAGGAACAG
GGCTTCCTGA CCTATGCGGA GGTCAACGAC CACCTTCCCG AGGATATCGC CGATCCCGAT
CAGGTGGAAG ACATCATCGC GATGATCAAC GACATGGGTA TCAGCGTCGT CGAGGAAGCG
CCTGACGAAG ATACCCTGAT GATGTCCGAT CAATCCGCCG ACGAATCGGC GGCGGAAGAA
GCCGTCGCCG CGCTGGCCGC GGTGGAAAGC GATGTCGGCC GCACCACCGA TCCCGTGCGC
ATGTACATGC GCGAGATGGG TACGGTGGAA TTGTTGACGC GCGAGGGCGA GATCGAAATC
GCCAAGCGTA TCGAGGAAGG CACCCGTGAG GTGATGTCGT CGCTGGCCTA TTTGCCTGGC
GCCGTGGACT CCATTCTCAG CGCTTACGAT GCCACCCAGG ATGAAGAAGC GCCGGGCCGG
CTGTCCGACC TGTTTTCCGG CTTCATCGAC CCCGACGAAG GGATTCCCGG CGTGGCCGAG
GCGGAGGTGC CCGAGCCCGA GCCCGAGCCG AGCGCCGCGG ACGGCGATGT CTCCGAGGAC
GATGACGAGG CCGAGGAAGA GGAAACCGGT GGTGGTCCGG ACCCCGAAGA AGCGCGGGCA
CGCTTCGAGC AGATCCGTGA GCAGAACGAG CGCGCCAAGG CCGCGATCGA AGAGCACGGG
CTCGGCTCGA AGGAAGCCAG CGCCGAGCAG GCCCGTCTGG CCGAGCTGTT CTCGCCGATC
AAGCTGGTGC CCAAGCATTT CGAGCGTCTG GTGGGCCAGG TGCGGATCAG CGTCGAGCAG
ATCCGCGGCC AGGAAAAGGC CATCATGCAG ATCTTCGTGA AGCAGGCCAA GGTGCCGCGC
AAGACCTTCA TCGGGTCGTT TCCGGGCGCC GAGTCCGACC TCGAGTGGCT GGACCGGTTC
ATGGCCAAGC ACACCAAGTT CGCCGATCGT CTCGAGCCGT TCCGCGCCGA CATCCAGCGT
GCCCAGCGCA AGATCGGCTT CGAGGAAGAG ATGGTCCTGC TGCCGGTCTC GCACATCAAG
GAAGTCAATC GCCGCCTGTC GATCGGCGAG GCCAAGGCGC GTCGCGCCAA GAAGGAAATG
GTCGAGGCCA ACCTGCGTCT GGTCATCTCG ATCGCCAAGA AGTACACCAA CCGTGGCCTG
CAGTTCCTGG ACCTCATCCA GGAAGGCAAC ATCGGCCTGA TGAAGGCGGT GGACAAGTTC
GAGTATCGTC GTGGCTACAA GTTCTCGACC TATGCCACCT GGTGGATTCG TCAGGCGATC
ACGCGGTCGA TCGCCGACCA GGCGCGCACC ATCCGTATTC CGGTGCACAT GATCGAGACC
ATCAACAAGC TCAACCGCGT GTCGCGGCAG ATGCTGCAGG AGATGGGGCG CGAGCCGACA
CCGGAAGAAT TGGGCGAGCG TCTCGAGATG CCCGAGGACA AGGTGCGCAA GGTGCTCAAG
ATCGCCAAGG AACCGATCTC CATGGAGACT CCGATCGGCG ACGACGACGA CTCGCATCTC
GGCGATTTCA TCGAGGATGG CACGATGCTG TTGCCGATCG ACTCCGCGAC CGGCGAAGGC
TTGATCGAGG CGACCCGCAA CGTGCTGGGC GGTCTGACCG CGCGCGAGGC CAAGGTGCTG
CGCATGCGCT TCGGCATCGA CATGAACACC GACCACACGC TGGAAGAGGT CGGCAAGCAG
TTCGATGTCA CCCGCGAGCG TATCCGTCAG ATCGAGGCCA AGGCACTGCG CAAGTTGCGT
CACCCCTCAC GCTCCGAGCC GCTGCGCACC TTCCTCGACG AGTAA
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| Protein sequence | MAGNTQQSRL KELIAQGKEQ GFLTYAEVND HLPEDIADPD QVEDIIAMIN DMGISVVEEA
PDEDTLMMSD QSADESAAEE AVAALAAVES DVGRTTDPVR MYMREMGTVE LLTREGEIEI
AKRIEEGTRE VMSSLAYLPG AVDSILSAYD ATQDEEAPGR LSDLFSGFID PDEGIPGVAE
AEVPEPEPEP SAADGDVSED DDEAEEEETG GGPDPEEARA RFEQIREQNE RAKAAIEEHG
LGSKEASAEQ ARLAELFSPI KLVPKHFERL VGQVRISVEQ IRGQEKAIMQ IFVKQAKVPR
KTFIGSFPGA ESDLEWLDRF MAKHTKFADR LEPFRADIQR AQRKIGFEEE MVLLPVSHIK
EVNRRLSIGE AKARRAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF
EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKLNRVSRQ MLQEMGREPT
PEELGERLEM PEDKVRKVLK IAKEPISMET PIGDDDDSHL GDFIEDGTML LPIDSATGEG
LIEATRNVLG GLTAREAKVL RMRFGIDMNT DHTLEEVGKQ FDVTRERIRQ IEAKALRKLR
HPSRSEPLRT FLDE
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