| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0834 |
|---|
| Symbol | |
|---|
| ID | 4027397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 929216 |
|---|
| End bp | 931711 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637966000 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_572890 |
|---|
| Protein GI | 92112962 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.153138 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTAT TTCTGACATC GCAAGGCCTG CCAGACACCA TTCAGGGGGA GTGGGACATC
AAGCTCATCG CCTTGTCTTG TCTCGTCGCC TGGCTGGCGG CAGGTCTGGG CCTGCTCATC
GGCGATCGCA TGCAGGAAGC CAACGGCAAA TGGCAGCGCC AGGGATGGCT GCTGGCTGGC
GCCGCCATGA TGGGGCTCGG CGTATGGAGC ATGCATTTCA CCGGCATGCT GGCGCTGCGA
CTGCCCCTGC CCATGCATTA CGACGCCGGA CTGACACTGC TGTCCCTCGT CCCCGCCATG
CTCGGCAGCG GCTATGCTCT GCGCATCATG GCGATGCCCC GTCCGCGCCT GAGTTACTCT
CTGGTCGGTG GCGTCGTGCT CGGCATGGGC ATCGGCATCA TGCACTACCT GGGCATGGAA
GCCATTCGCA TGCCCGTGGA GGTACGCTAT GACATCGGCC TGTTCGTCAT GTCGCTGGTG
GTCGCGATAG GGCTAGGTGC CGCCGCGATG CTCATCCATC GCCGCTATGC GCGGCAGCGA
CGCCTCAACC GTCTCGATCA CCGCCTGGTC AGCATCGCCG CCTGCATTTC GCTGGCCATC
AGCGGCATGC ACTACACTGC CATGTCGGCC ACCTACTATC TGCCCACGCC AACACCTGCC
CCTCAACACG CGGTGACGCC TGCGTCCTGG CTGGGCGTCA GCGTCAGCGG CATCGTCATT
CTCCTGCTGA TGGTTGCCGG GCTGTGGGTA TTCATCGACC GGCGCCTGCA GCGCCATCAG
CGTCAGTCCG TCATGTCGCG CGAGCAGCTC ATGGAGGTGA TCGCCGCCAT CAACGACGCC
TTCCTGCTGT TCGATCACCG GGGCCGGATC GTGCTCAGCA ACCGGACCTT CTCGACGCTG
ACCGGCTATA CCCCCGACGA AATTCGCAAC CAGCCACTGT CGATTCTCGA ACACTCGCAC
GAAAGCGCCC GGACGTACCG AGACATCCAG CGTTGCGTCG TCGAGCACGG CCACTGGCAA
GGCGAGATCG AGGCACGACG CAAGAACGGC GAGGCTTTTC CCGTGCGCGT CAGCGTCAAT
CGCGTCGATT ACAGCCAGGG CAATGTCCAT CACTTCGTCG CCACGCTTCA TGACCTGAGC
GCTCACCGCG AAGCGCAAGC GAAGATTCAC CGGCTCGCCC ATCACGACAC CCTCACCGGC
CTGCCCAATC GCCAGACGCT CTACGCGCGC CTGGATGCCC TGCAAGCCGC GTGTCGCGCA
CAGGGACCGG GCGGCGCGCT GATCATGCTC GATATCGACA ACTTCAAGGC GCTCAACGAT
TCCCGAGGCA ATGCCGTCGG CGACACCCTG CTTCTGCATG TCGCGCGTCG CCTCAAGCGC
TTCGCTCGCC ACGAGCATGA CCTGGCACGC CTGGGCGGCA ATGAATTCGC TCTGATCGTC
ACCGACCTGC CGAGTGCCCA CGACGATGCC GACGAGGCAT TGAGCCGCCA CCTCGACACC
GTGCGTCAAG CCATCGGCGG CGTATACGAC CTCGACGATT TCACTCATAC CACGACGCAC
AGCCTGGGCG GCGTCCGCTT CGGCGACGGC GACGTGTCGG CGGACGAGCT GGTCAAGCGC
GCCAGTCTGG CGATGTCCCA CGCCAAGCAG GAAGGCGGCA ACGCCAGTCG CGCCTTCCGC
CCCGAGATGG AGCAGGCACT TCAAGTGCGC GTCTGCATGG AAGCCGAACT CCGTCAGGCG
CTCGCCACCG ACCAGTTGCA GCTCTTCTAT CAGCCTCAGG TGGATACCCG GGGGACGATC
ATCGGTGCCG AGGCCCTGAT TCGCTGGCAG CATCCCGAAC GCGGCATGAT TTCGCCGGGC
GACTTCATTC CCCTCGCCGA GGAAACGGGC CTCATCGAAC AGATCGGTGG CTGGGTGCTG
GATACGGCCT GTCAGCAGCT CGCCACCTGG TCACGCCACG ACGCCACGTC CCACCTGCAA
TTATCGATCA ACGTCAGTGT GCGCCAGTTC CAGCAAGCCG ATTTCGTCTC GCGGGTATTG
GACACCATTG CACGTCACCG GGCGCCGGCC GAGCGGCTCA CGCTGGAACT GACCGAAAGC
CTGCTGCTGG CCAATGTCGA GGGGGTCATC GACAAGATGA CACGGCTCAA GCAGCACGGC
CTGAACTTCT CGCTGGACGA TTTCGGCACC GGCTACTCGT CGCTGGCCTA TCTCAAGCGC
CTGCCCTTCA ACACCTTGAA GATCGATGTC TCCTTCGTCC GCGACGTGCT CGTCGATGCC
AACGACGCAG CCATCGTCAA GACCATCGTC GCGCTGGCCG ACAGCCTGCA GCTCAAGTCC
GTCGCCGAAG GCGTCGAGAT GCAGGCCCAA CGCGAGTTCC TGGAGCGCCT GGGCTGCCAC
TATCACCAGG GCTATTATTT CGGCCGCCCG TCACCCATCG ATGTCTTCGA AGCGCACCTG
GCGACGCAGG CCTCCGCGAG CGCTACCACG CCATGA
|
|---|
| Protein sequence | MALFLTSQGL PDTIQGEWDI KLIALSCLVA WLAAGLGLLI GDRMQEANGK WQRQGWLLAG
AAMMGLGVWS MHFTGMLALR LPLPMHYDAG LTLLSLVPAM LGSGYALRIM AMPRPRLSYS
LVGGVVLGMG IGIMHYLGME AIRMPVEVRY DIGLFVMSLV VAIGLGAAAM LIHRRYARQR
RLNRLDHRLV SIAACISLAI SGMHYTAMSA TYYLPTPTPA PQHAVTPASW LGVSVSGIVI
LLLMVAGLWV FIDRRLQRHQ RQSVMSREQL MEVIAAINDA FLLFDHRGRI VLSNRTFSTL
TGYTPDEIRN QPLSILEHSH ESARTYRDIQ RCVVEHGHWQ GEIEARRKNG EAFPVRVSVN
RVDYSQGNVH HFVATLHDLS AHREAQAKIH RLAHHDTLTG LPNRQTLYAR LDALQAACRA
QGPGGALIML DIDNFKALND SRGNAVGDTL LLHVARRLKR FARHEHDLAR LGGNEFALIV
TDLPSAHDDA DEALSRHLDT VRQAIGGVYD LDDFTHTTTH SLGGVRFGDG DVSADELVKR
ASLAMSHAKQ EGGNASRAFR PEMEQALQVR VCMEAELRQA LATDQLQLFY QPQVDTRGTI
IGAEALIRWQ HPERGMISPG DFIPLAEETG LIEQIGGWVL DTACQQLATW SRHDATSHLQ
LSINVSVRQF QQADFVSRVL DTIARHRAPA ERLTLELTES LLLANVEGVI DKMTRLKQHG
LNFSLDDFGT GYSSLAYLKR LPFNTLKIDV SFVRDVLVDA NDAAIVKTIV ALADSLQLKS
VAEGVEMQAQ REFLERLGCH YHQGYYFGRP SPIDVFEAHL ATQASASATT P
|
|---|
| |