| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0677 |
|---|
| Symbol | |
|---|
| ID | 4026705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 759663 |
|---|
| End bp | 760985 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637965847 |
|---|
| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
|---|
| Protein accession | YP_572737 |
|---|
| Protein GI | 92112809 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.963442 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATATG AAATGATCGC CATCGTGATG TTCAGCTCGA TGATGCTGAT GCTGCTCACC
GGACAACGTG TTTTCGGCGC CATCGGCTTC GTCGGCGCCC TGGCGGGGGT CCTGCTGTGG
GGAACCGGTG GAGTGGACAT TCCGTTCTCG TCCGCGATGA AGCTGATGAA ATGGTACCCG
CTGCTGACCC TGCCAATGTT CATCTTCATG GGGTACGTGC TCTCGGAAAG CCGTATCGCC
GATGACCTCT ATCGGATGTT TCATGTCTGG ATGGGGCCGA TCAAAGGCGG CCTGGCCATT
GGCACGATCG GGCTGATGGT GTTGATCTCG GCCATGAACG GGCTGTCGGT GGCCGGTATG
GCGATCGGCG CCACCATCGC CCTGCCCGAA CTGCTCCGGC GCGGGTACGA CAAGATCATG
GTCACCGGCG TCATCCAGGC GGGGTCCAGT CTCGGCATCC TGGTGCCGCC TTCGGTGGTG
CTGGTGCTGT ACGCCATGAT CGCGCGCCAG CCCGTAGGAC AGTTATGGCT AGCCGGCGTG
CTACCGGGGC TGATGATGGC GACGCTCTTC ATCATCTATA TCTATGTGCG CTGCCGCTTT
CAGCCAAGCC TGGGCCCCGT TCTTCCCGCC GAGGAACGGA ACGTGTCGCT GGCCGAGAAA
CTGCGCCTGC TGAGGGCGGG GCTGCTGCCC CTGGTGATCT TTGCGGTGAT GATGGTGCCC
TTCGTCAAGG GCTGGACATC CCTGGTCGAA AGTTCGGCGG TCGGCGCGAT GGCCGCGCTG
CTGGCGGCTA TCCTCAAGGG ACGAATGACG CGCCAGGTCT TCGAGGTATC GGTGCGCAAG
ACGCTGGCCA TTTCCTGCAT GTTCATGTGG ATCATCCTGG CAGCCTTGGC CTTCGGGGCC
ATATTCGACG GCCTGGGGGC GGTGAAGGCC ATCGAGGGCC TGTTTACCGA GCGTCTGGGG
CTCTCGCCCT GGACGATTCT GATCCTCATG CAGCTCAGCT TCATCGTCAT GGGGACCTTC
CTCGACGATA CCGCCATGCT GGTGATCGTG GCGCCACTTT ACGTGCCGTT GGTCGAGGCG
CTGGGGTTCG ATCTGATCTG GTATGGCGTT CTCTACACGA TCACGACGCA GATCGCCTAC
ATGACGCCGC CATTCGGATA CAACCTTTTC CTGATGCGTG CCATGGCGCC CCCGGAGATC
GGGCTGCGTG ACATCTATTT ATCCATTCTC CCCTTCGTGG CGGTGATGAT GACAGCCTTG
AGTCTGGTCA TGGTCTTTCC GCAGATCGCC CTTTGGCTTC CAGGCTACAT TTATGGGAGT
TGA
|
|---|
| Protein sequence | MSYEMIAIVM FSSMMLMLLT GQRVFGAIGF VGALAGVLLW GTGGVDIPFS SAMKLMKWYP
LLTLPMFIFM GYVLSESRIA DDLYRMFHVW MGPIKGGLAI GTIGLMVLIS AMNGLSVAGM
AIGATIALPE LLRRGYDKIM VTGVIQAGSS LGILVPPSVV LVLYAMIARQ PVGQLWLAGV
LPGLMMATLF IIYIYVRCRF QPSLGPVLPA EERNVSLAEK LRLLRAGLLP LVIFAVMMVP
FVKGWTSLVE SSAVGAMAAL LAAILKGRMT RQVFEVSVRK TLAISCMFMW IILAALAFGA
IFDGLGAVKA IEGLFTERLG LSPWTILILM QLSFIVMGTF LDDTAMLVIV APLYVPLVEA
LGFDLIWYGV LYTITTQIAY MTPPFGYNLF LMRAMAPPEI GLRDIYLSIL PFVAVMMTAL
SLVMVFPQIA LWLPGYIYGS
|
|---|
| |