| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0612 |
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| Symbol | |
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| ID | 4029081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chromohalobacter salexigens DSM 3043 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007963 |
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| Strand | + |
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| Start bp | 680509 |
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| End bp | 682515 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637965780 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_572673 |
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| Protein GI | 92112745 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0385351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGATGC GAACGCTGCG AGGCTGGCTG AGCGGCTGGC TCTGGCTGGT TGGGGTGATC
GTCTGCGCCC AGGGGCAGGC GGCGACGCTG ACGTCGCTGG ACATCGCCCA GCGCGAGGAT
GGCGGCATCG ATGCCATGCT CGGTTTCGAC GGGCCGGCGC CTGAGGCGCA CAGTTACCGC
GGCGACGCGC CGGCGCAGAT GATCGTCGAC CTGCCGGATA CGGCCAGTGG GCTCGAGCAA
CGCACGGTCG AGGTCGGGCA GGGCGGGCTG CGCGACATCA GCGTCGTCGA CGCTGCCGAA
CGCACGCGTC TGGTCTTCGG ACTGACGTCG CCCCAGGCAT ATTCGGTCCA GCGCCAGGGC
GATCGTCTGA GGGTGCGATT GGGCAGCGAG GCGATCCCGG ATGGCGTGAC GTCCATCCGC
GATCTCGATT TTCGCCGAGG CAATGCCGGC GGCGGGCGGC TGGTGGTGAC CCTCGATGCG
CCCGGGGTGT CTCCGGAAAC CTCGGTCGAC GGCAATACCC TGACACTGAC GTTGCCCGGC
ACGCGCTTGC CCGACGCATT GGATCGCATT CTCGATGTCA GCGACTTCGC CACACCGGTG
TCGCGTATCG TGCCGAATCG CCAGGACGAT GCCGTGACCC TGACGCTGGA GAATCGCGAG
CCCTTTCAGC ATCTGGTGAC GCAGCGCGGT GATCGCCTGA TCGTCGACGT GCAACCCCGC
AACGAGCAGA CCAGCGATGC CCGGGACGCC TCGCCGACCT ATACCGGCGA GCCGATCAGC
CTCAATTTCC AGAATATCCA GGTGCGTGAG GTGCTGTCGG TCCTGTCCGA TTTCAGCGGG
CTCAACATCG TGGCCAGCGA TAGCGTACAG GGCAGCGTGA CACTCAATCT CCAGCAGGTG
CCCTGGGATC AGGCATTGGC ATTGATCCTG CAGAGTCACG GGTTGGCCAG CCGCCGCAAC
GGCGACGTGA TCGTGGTGGC GCCCGTCGAT GAACTGGCGC AGATGGAACG TCAGACTCTG
GAGAACCGCG CTCAATCCGA GCAGTTGGCC CCCCTGGTCA CCGACTACGT GCAGGTGCGC
TATGCCAAGG CCACCGATCT GGCGGCGATG CTGCGCGGCA GCGAAGGCTT CGGTCTGCTT
TCCGAGCGCG GGCGCGTCAC GGTCGATGAG CGCACCAATA CCCTGCTGGT GCGTGATACC
CGCGAGCAAC TGGCCAGCAT CCGCGGCATG CTCGAGCGGC TCGACGTGCC GGTGCGCCAG
GTGCAGATCG AGGCGCGCAT CGTCATCGCG CGCGACACGG CGTCCCGGGA ACTGGGCGTC
AACTGGGGCA TCTCGCAGCG CCAGGGCGTC ACCTTCGATG ACGACGGCGT GGGCAGCGTG
GTGGACCGCA ACCCCAGTGG CGCCAACCGC GGCTCCGCCG GCTTGTCCGT GGACCTGGGC
GACAGCGACG GCAGCGGCTC CACCTTCAGC TTCGGTTACC TTTCCGGCGA TGTCCTGCTC
GACCTGGAAT TGCGCGCCCT GGAAAGCGAG GGCAAGAGTC AGACCATCTC TCAGCCCAAG
GTGATCACCG CCAACCAGAA GACGGCGGTC ATCAAGCAGG GACAGGAGAT CCCCTACCAG
GAGTCGACCT CGTCCGGTGC CACCAACGTG GAATTCAAGG AAGCCGTGCT GTCGCTGGAG
GCCACACCGC AGATCACGCC CGACGGCAGT ATCGTCATGG ATCTGTTGAT CAACAACGAT
ACCGTCGCCG ACAACAGCTA TGATGGTGCA CCTGCGATCG ATACCAATTC CATCGAGACC
CAGGTGCTCG TGGACGATGG TGCCACGGTG GTGCTGGGCG GCATCCTGAC GTCCGAACAG
CTGCGCAACC TCTACAAGAC CCCGTTCCTC GGGGACTTGC CGTTGATCGG TTCGCTGTTC
CGCTATACCC AGGAATCCAA CGAAAAGGTA GAATTGCTGA TCTTCATAAC ACCCACGATC
ATCGGAGACG GACAGGCGAA TCGCTGA
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| Protein sequence | MMMRTLRGWL SGWLWLVGVI VCAQGQAATL TSLDIAQRED GGIDAMLGFD GPAPEAHSYR
GDAPAQMIVD LPDTASGLEQ RTVEVGQGGL RDISVVDAAE RTRLVFGLTS PQAYSVQRQG
DRLRVRLGSE AIPDGVTSIR DLDFRRGNAG GGRLVVTLDA PGVSPETSVD GNTLTLTLPG
TRLPDALDRI LDVSDFATPV SRIVPNRQDD AVTLTLENRE PFQHLVTQRG DRLIVDVQPR
NEQTSDARDA SPTYTGEPIS LNFQNIQVRE VLSVLSDFSG LNIVASDSVQ GSVTLNLQQV
PWDQALALIL QSHGLASRRN GDVIVVAPVD ELAQMERQTL ENRAQSEQLA PLVTDYVQVR
YAKATDLAAM LRGSEGFGLL SERGRVTVDE RTNTLLVRDT REQLASIRGM LERLDVPVRQ
VQIEARIVIA RDTASRELGV NWGISQRQGV TFDDDGVGSV VDRNPSGANR GSAGLSVDLG
DSDGSGSTFS FGYLSGDVLL DLELRALESE GKSQTISQPK VITANQKTAV IKQGQEIPYQ
ESTSSGATNV EFKEAVLSLE ATPQITPDGS IVMDLLINND TVADNSYDGA PAIDTNSIET
QVLVDDGATV VLGGILTSEQ LRNLYKTPFL GDLPLIGSLF RYTQESNEKV ELLIFITPTI
IGDGQANR
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