Gene Csal_0446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCsal_0446 
Symbol 
ID4027020 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChromohalobacter salexigens DSM 3043 
KingdomBacteria 
Replicon accessionNC_007963 
Strand+ 
Start bp491627 
End bp492628 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content59% 
IMG OID637965604 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_572507 
Protein GI92112579 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.384145 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCGTT CAGTGACAGA GTTTCTCCGT CCTCGCGACA TCAAGGTCGA AGAGATCAAC 
GCGAATCATG CGAAGATCGT GCTCGAGCCG TTCGAGCGTG GTTTCGGCCA TACCCTGGGG 
AATGCTCTGC GTCGCATCCT GCTGTCTTCC ATGCCCGGTT GCGCCGTTGT GGAAGCGGAG 
ATTGAGGGCG TTCTGCACGA GTACAGCGCC ATCGAGGGCG TCCAAGAGGA CGTCATCGAG 
ATTCTCCTGA ACCTCAAGGA CGTTGCCGTC AAGATGCACG GTAACCGTGA CGAGGTGGTT 
CTGGCGCTGA GCAAGCAGGG GCCGAGCGTG GTCACCGCTG GCGATATCGC CGTCGATCAT 
GACGTCGAAA TCGTCAACCC GGATCACGTC ATCGCGCACC TCAACGACAG CGGCGAGCTG 
AAAATGCAGC TCAAGGTGGT TCGCGGTCGT GGCTACGAGC CGGCGGATAC CCGTGCTTCC 
GAGGAAGACG AATCGCGTGC GATCGGCCGC CTCCAGTTGG ATGCGACCTT CAGCCCGGTA 
CGTCGTGTGT CCTACTCCGT GGAAGCCGCG CGTGTCGAGC AGCGTACCGA CCTCGATAAG 
CTGATTATCG ACTTGGAAAC CGACGGCACC CTGGACCCGG AAGAAGCGAT TCGCCGCAGT 
GCGACCATCC TCCAAGAGCA GCTGGCCGCG TTCGTCGACC TCGAAGCCGA TAAGGAACAG 
GAAGTCGAAG AAGAAGAGGA TCAGATCGAT CCGATTCTGC TGCGCCCCGT AGACGATCTC 
GAGTTGACCG TCCGCAGCGC CAACTGCCTG AAGGCCGAGA ATATCTATTA TATCGGTGAT 
CTGATTCAGC GTACCGAAGT GGAGCTGTTG AAGACCCCGA ACCTCGGCAA GAAATCCTTG 
AATGAAATCA AGGACGTTCT GGCAGCGCGC GGTCTTTCCC TCGGCATGCG GCTGGAAAAT 
TGGCCGCCGG CGAGCCTGAA GGACGACAAG GCCTCTGCGT GA
 
Protein sequence
MQRSVTEFLR PRDIKVEEIN ANHAKIVLEP FERGFGHTLG NALRRILLSS MPGCAVVEAE 
IEGVLHEYSA IEGVQEDVIE ILLNLKDVAV KMHGNRDEVV LALSKQGPSV VTAGDIAVDH 
DVEIVNPDHV IAHLNDSGEL KMQLKVVRGR GYEPADTRAS EEDESRAIGR LQLDATFSPV 
RRVSYSVEAA RVEQRTDLDK LIIDLETDGT LDPEEAIRRS ATILQEQLAA FVDLEADKEQ 
EVEEEEDQID PILLRPVDDL ELTVRSANCL KAENIYYIGD LIQRTEVELL KTPNLGKKSL 
NEIKDVLAAR GLSLGMRLEN WPPASLKDDK ASA