| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0341 |
|---|
| Symbol | |
|---|
| ID | 4026885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 380039 |
|---|
| End bp | 381958 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637965490 |
|---|
| Product | TRAP transporter, 4TM/12TM fusion protein |
|---|
| Protein accession | YP_572402 |
|---|
| Protein GI | 92112474 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.20739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCA TGCCACTCTC GTCTCCAGGC ACTCCACGCC AACCTGCTCC CTATGGCCTG
CTGACGGTGA CGCTGGCCAC GATCATGACC CTCTGCGCCA TTCTTCAGGC CCTGGATATC
CCCCAGCGGC TTGGACTCAG CCTGTATACC GAACAGTATC TGGCCGCGAT CCTGGCCTTC
GCGCTCGGCA TGACCTTTCT CGTGGCCCCC CGTTTCACCG GGCGGCTGCG TCTCCTCGAT
CCAGCCCTGG CGCTGGCGGG CTTTTGTGCC GCGGGCTATA TCGCCCTGAG CTACCCCACG
ATCGTCAACG AACTGGTCTA CCGGCCCGTG GACGGCCTGA TCGTCAGCCT CATCATCGGC
TTGCTGACGA TCGAAGCCGT GCGCCGGCTG ACCGGACCGG GGCTGACCAT CATCGTGGCC
CTGTTCCTCG CCTACGGCCT CGTCGGCTAC CTGCTGCCCT TCGGAATGAC GCGCCAGATC
CTGTGGGACA GGCTCGCAAT CTATGTGGTC ATGGATACCA ACGGCCTGAT CGGCTTGCCG
TTGATGGTCA CGGCCAGCAT GGTCTTTTCG TTCATCTTCC TGGGTCAGCT GCTCGTCAGT
TCCGGCGGCA GCGCGTTCTT CAACGACCTG GCCCTGGCCC TGGTCGGACG TTCGCGGGGC
GGGGCCGCGA AGATAGCGGT GGTCTCGTCC TTTCTCTTCG GCAGTGTCTC GGGCAGTGCC
GTCGCCAATG TCGCGGCCTC GGGCGGTGTC ACGCTGCCAT TGATGCGCCG GGCGGGGTAC
AAGCCCCACA TGGCCGCCGC CATCGAAGCC CTGGCGTCCA CCGGCGGGCA ACTGGCCCCT
CCGATCATGG GGGCAGCCGC CTTCCTGATG GCGGAGTTCC TGCAGATTTC TTTCGCCACG
GTGATCCTGG CGGCGGTGAT CCCTTCCTTG CTCTACTACC TGGCGATCTT CTTCTACATC
GACGCCCACG CCGCCGCGAA CGGCATGTCC CTGCCCGAAG ACGTGGAAAT TCGTCCGCTG
CGACGCGTGC TGGCGGATGG CTGGCAGTTC GTCGCCCCGT TCGTGATCCT CATCTTCGGC
CTCTTCGGCC TGAACTGGCG CCCGGAGCTG GCCGCGCTCG CAGCCGCCCT GACCCTGGTC
GTGCTGGCGC TGGTGTTGCC CTACCGTGGC AAGCGCAGTC ATCTGGGCGA CCTGCTGCGC
GCCTTTCCCG ACGCGGGCAA GGGCATGATC GAGATCGTCG TCATCGCGGC CGCCGCCGGG
ATGGTCATTG GCGTTCTGAA CATATCGGGG CTGGCGTTTT CCCTGACGCT GAACCTGGTC
GCGATGGCGG CAGGCAGCCT GCTTCCCCTG CTGATCATCG CGGCGCTCGT CAGTGTCGTG
CTGGGCATGG GGATGCCCAC CGTGGGGGTC TACGTGCTGT TGGCCAGTCT CATCGGCCCC
GCCCTCGTGC AGGCCGGCAT CGACCCCATT GCCGCACACA TGTTCCTGCT CTATTTCGGG
ATGCTCTCGA TGATCACGCC CCCCGTCGCC CTAGCCAGCT TCACCGCCGC GACCATGGCC
GGCGCCGAAG CGATGAAGAC CGGCTGGCAG GCATTCCGCA TGGGCTGGGT GGCTTACCTG
ATCCCCTTCG TCATGGTGTT CGAGCCGGGG CTGGTCATGC AGGCCGCGCC CATCGATATC
GCATGGCAAC TCCTCGGGGC GCTGGTGGGC GTCTGGTTCG CGACCGGCGC CATCTACGGC
TATCTGACCC GGTCCCTGGG CATCGTGGAG CGCGTGCTTC TGGGTATGAT TGCGCTGGCG
GGAATATTAC CGTTCTCGCT GGGCTGGGGT GGCCATCTGG TCAATCTGCT GGCCATCTGC
GCAGGCGTGA TTCTCATATT TCGCACTCGG CTGATCCCGA GTCTATCTGG AAGGAGTTGA
|
|---|
| Protein sequence | MTAMPLSSPG TPRQPAPYGL LTVTLATIMT LCAILQALDI PQRLGLSLYT EQYLAAILAF
ALGMTFLVAP RFTGRLRLLD PALALAGFCA AGYIALSYPT IVNELVYRPV DGLIVSLIIG
LLTIEAVRRL TGPGLTIIVA LFLAYGLVGY LLPFGMTRQI LWDRLAIYVV MDTNGLIGLP
LMVTASMVFS FIFLGQLLVS SGGSAFFNDL ALALVGRSRG GAAKIAVVSS FLFGSVSGSA
VANVAASGGV TLPLMRRAGY KPHMAAAIEA LASTGGQLAP PIMGAAAFLM AEFLQISFAT
VILAAVIPSL LYYLAIFFYI DAHAAANGMS LPEDVEIRPL RRVLADGWQF VAPFVILIFG
LFGLNWRPEL AALAAALTLV VLALVLPYRG KRSHLGDLLR AFPDAGKGMI EIVVIAAAAG
MVIGVLNISG LAFSLTLNLV AMAAGSLLPL LIIAALVSVV LGMGMPTVGV YVLLASLIGP
ALVQAGIDPI AAHMFLLYFG MLSMITPPVA LASFTAATMA GAEAMKTGWQ AFRMGWVAYL
IPFVMVFEPG LVMQAAPIDI AWQLLGALVG VWFATGAIYG YLTRSLGIVE RVLLGMIALA
GILPFSLGWG GHLVNLLAIC AGVILIFRTR LIPSLSGRS
|
|---|
| |