Gene Csal_0215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCsal_0215 
Symbol 
ID4027180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChromohalobacter salexigens DSM 3043 
KingdomBacteria 
Replicon accessionNC_007963 
Strand
Start bp239784 
End bp240728 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content67% 
IMG OID637965366 
Productsecretion protein HlyD 
Protein accessionYP_572278 
Protein GI92112350 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.509726 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATCT CCTCGCGCGC ACGCCGATAC GTGCGCCCGC TGCTGACCCT GGCGATACTC 
GCGCTGGCCG TGATCGCCAT CGCGCAGATC TGGAACCACT ACATGCATGA CCCCTGGACG
CGCGATGGCC GCGTTCGGGC CGACATCATC AACCTCGGGA CCGATGTCTC GGGCCTGGTC
GAAAACCTTC AGGTCGAGGA CAACGACTTC GTGCATGCCG GCGACGTGCT GTTCACCATC
GACAAGCAGC GCTACGCGCT GGCGCTGTCC GAGGCCCGCG CCAACCTCAA CAACCTCGAG
CAGCAGCGCG CGGAGGCCAA GGCCGCCAAC GCCCGTCGTC AGAAGCTCGG CGACTACGCC
TCGCAGGAAG ATCGCGACGA CGCACGCTTC GCCTACTCCA GCGCTCAGGC TCAGGTCGAG
CAGGCCGAGG TCGCGGTCGA GCAGGCCAAG CTCGACCTCG AACGCGCCAC CGTGCGCGCC
CCGGTCGACG GTTATGTCAC CAACCTGCTG CTGCGACCCG GCGAGTACGT CTCGGCCGGC
GAGGACGCCG TCACCCTGGT CGATGCCGGC AGCTTTCACG TGCTCGGCTA TTTCGAGGAA
ACCAAGCTCG ACGCCATCGA CATCGGCGCC CCGGCGCGCA TCCAGCTGCT CGCCAGCGAC
ACGCCGCTCT GGGGGCACGT CGACAGCATC GCACGCGGCA TTTCCGACAA GAGCCTCGAC
AGCCAAGGCA CGGGGCTGGC GAACGTCAGC ACCTCCTTCG ACTGGGTCCG GCTCTCGCAG
CGCATCCCCG TGCGCATCGC CCTCGACGAC GTCCCCGAGG ACATCGACCT CGCGGCCGGG
CTCACCGCCA CGGTCTATCT CAACGATACG CGCAGCGAAC ACCGGCAGGC TCCGGACTGG
CAGCGCACCC TCACCCGCTG GTGGGAGTCG CTGGTCAGCA TTTGA
 
Protein sequence
MTISSRARRY VRPLLTLAIL ALAVIAIAQI WNHYMHDPWT RDGRVRADII NLGTDVSGLV 
ENLQVEDNDF VHAGDVLFTI DKQRYALALS EARANLNNLE QQRAEAKAAN ARRQKLGDYA
SQEDRDDARF AYSSAQAQVE QAEVAVEQAK LDLERATVRA PVDGYVTNLL LRPGEYVSAG
EDAVTLVDAG SFHVLGYFEE TKLDAIDIGA PARIQLLASD TPLWGHVDSI ARGISDKSLD
SQGTGLANVS TSFDWVRLSQ RIPVRIALDD VPEDIDLAAG LTATVYLNDT RSEHRQAPDW
QRTLTRWWES LVSI