Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Csal_0215 |
Symbol | |
ID | 4027180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chromohalobacter salexigens DSM 3043 |
Kingdom | Bacteria |
Replicon accession | NC_007963 |
Strand | - |
Start bp | 239784 |
End bp | 240728 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637965366 |
Product | secretion protein HlyD |
Protein accession | YP_572278 |
Protein GI | 92112350 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.509726 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGATCT CCTCGCGCGC ACGCCGATAC GTGCGCCCGC TGCTGACCCT GGCGATACTC GCGCTGGCCG TGATCGCCAT CGCGCAGATC TGGAACCACT ACATGCATGA CCCCTGGACG CGCGATGGCC GCGTTCGGGC CGACATCATC AACCTCGGGA CCGATGTCTC GGGCCTGGTC GAAAACCTTC AGGTCGAGGA CAACGACTTC GTGCATGCCG GCGACGTGCT GTTCACCATC GACAAGCAGC GCTACGCGCT GGCGCTGTCC GAGGCCCGCG CCAACCTCAA CAACCTCGAG CAGCAGCGCG CGGAGGCCAA GGCCGCCAAC GCCCGTCGTC AGAAGCTCGG CGACTACGCC TCGCAGGAAG ATCGCGACGA CGCACGCTTC GCCTACTCCA GCGCTCAGGC TCAGGTCGAG CAGGCCGAGG TCGCGGTCGA GCAGGCCAAG CTCGACCTCG AACGCGCCAC CGTGCGCGCC CCGGTCGACG GTTATGTCAC CAACCTGCTG CTGCGACCCG GCGAGTACGT CTCGGCCGGC GAGGACGCCG TCACCCTGGT CGATGCCGGC AGCTTTCACG TGCTCGGCTA TTTCGAGGAA ACCAAGCTCG ACGCCATCGA CATCGGCGCC CCGGCGCGCA TCCAGCTGCT CGCCAGCGAC ACGCCGCTCT GGGGGCACGT CGACAGCATC GCACGCGGCA TTTCCGACAA GAGCCTCGAC AGCCAAGGCA CGGGGCTGGC GAACGTCAGC ACCTCCTTCG ACTGGGTCCG GCTCTCGCAG CGCATCCCCG TGCGCATCGC CCTCGACGAC GTCCCCGAGG ACATCGACCT CGCGGCCGGG CTCACCGCCA CGGTCTATCT CAACGATACG CGCAGCGAAC ACCGGCAGGC TCCGGACTGG CAGCGCACCC TCACCCGCTG GTGGGAGTCG CTGGTCAGCA TTTGA
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Protein sequence | MTISSRARRY VRPLLTLAIL ALAVIAIAQI WNHYMHDPWT RDGRVRADII NLGTDVSGLV ENLQVEDNDF VHAGDVLFTI DKQRYALALS EARANLNNLE QQRAEAKAAN ARRQKLGDYA SQEDRDDARF AYSSAQAQVE QAEVAVEQAK LDLERATVRA PVDGYVTNLL LRPGEYVSAG EDAVTLVDAG SFHVLGYFEE TKLDAIDIGA PARIQLLASD TPLWGHVDSI ARGISDKSLD SQGTGLANVS TSFDWVRLSQ RIPVRIALDD VPEDIDLAAG LTATVYLNDT RSEHRQAPDW QRTLTRWWES LVSI
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