| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0078 |
|---|
| Symbol | |
|---|
| ID | 4027257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 98181 |
|---|
| End bp | 99122 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637965229 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_572141 |
|---|
| Protein GI | 92112213 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | [TIGR03212] putative urate catabolism protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATGG CATCCTCCAC CGATCCGTCC GAGGTTTACC CACGCGATCT CGTCGGCTAT
GGCCGCACGC CACCGCAAGC GAACTGGCCG GGCCAGGCCC GCGTCGCCGT GCAGTTCGTC
CTCAACTACG AAGAGGGTGG CGAGAACAGC GTGCTGCACG GCGATAGCCA CTCCGAACAG
TTTCTCTCCG AGATCGCCGG GGCCGAGGCC TATCCCGACC GCCACCTGAG CATGGAGTCG
ATCTACGAAT ACGGTTCGCG GGCGGGGGTG TGGCGCGTGC TGCGCGAGTT CGAGCGCCGC
GGGTTGCCGT TGACGGTATT CGGCGTTGCC ATGGCGCTGG AGCGTCATCC CGAGGTGGCC
CAGGCCTTCC AGGAACTGGG CCACGAGATC GCCTGCCATG GCTGGCGCTG GATTCACTAC
CAGAACGTGC CGGAAGCACT CGAACGCGAC CACATGCAGC GTGCCATCGA GGTGTTCCGC
CGCTTGTACG GCGAGGCGCC CCTGGGGTGG TACACCGGTC GCGACAGCCC CAATACACGG
CGGCTGTTGC TCGATCAGGG CGGCTTCCTC TACGACAGCG ACTACTACGG TGACGATCTG
CCGTTCTGGA GCGACGTCCA GGACAGTCAG GGCCAGACGC ACCGCCACCT GATCGTGCCC
TACACGCTGG ATACCAACGA CATGCGCTTC GCCTCGCCCA CCGGCTTCGA CCACGGCGAG
CCCTTCTTCC AGTACCTGCG CGATGCCTTC GACGTGCTCT ACGCAGAAGG CGCGGAAACA
CCGAAGATGC TCTCCATTGG TCTGCATTGC CGACTGATCG GCCGCCCCGG ACGCTTCCGC
GCGCTGCAGC GCTTCCTCGA TCACCTCGAG ACCCATGACC GGGTGTGGAT AACCCGGCGT
GTGGATATCG CGCGTCACTG GGCGGCAACG CACCCGGCTT GA
|
|---|
| Protein sequence | MGMASSTDPS EVYPRDLVGY GRTPPQANWP GQARVAVQFV LNYEEGGENS VLHGDSHSEQ
FLSEIAGAEA YPDRHLSMES IYEYGSRAGV WRVLREFERR GLPLTVFGVA MALERHPEVA
QAFQELGHEI ACHGWRWIHY QNVPEALERD HMQRAIEVFR RLYGEAPLGW YTGRDSPNTR
RLLLDQGGFL YDSDYYGDDL PFWSDVQDSQ GQTHRHLIVP YTLDTNDMRF ASPTGFDHGE
PFFQYLRDAF DVLYAEGAET PKMLSIGLHC RLIGRPGRFR ALQRFLDHLE THDRVWITRR
VDIARHWAAT HPA
|
|---|
| |