| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0053 |
|---|
| Symbol | |
|---|
| ID | 4027232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | - |
|---|
| Start bp | 61956 |
|---|
| End bp | 64115 |
|---|
| Gene Length | 2160 bp |
|---|
| Protein Length | 719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637965204 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_572116 |
|---|
| Protein GI | 92112188 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTT CCGCCTCCGA ACGTTTCACG GACCCGGTCG ACGAGAGCAA CGACCCGCTG
CGGGAGGGCA TGGTGCTGCT ATGCCGTCGC CTCGACCGCC CCACCTCCCT GTCGGAGCTC
GGCGACGGGC TGCCGTTGGA GCAAGGACGG CTACCGCTGA GAGAAGTCTC CCGCGCCCTG
CGCCGGGCCG GGGTCAGCGC CCGCGTGAGC CGACGTTCGC TGAAGGATAT CTCGCCGCGA
TTGCTGCCGG CGCTGCTGAT TCTCGACAAC GGCGATACGG CGCTGCTGGA GTCGCTGGAT
GCCGGGGAAG CCCGCATCGC CCTCCCCGAA GCCGACGGCG GCGAGGAGAC GCTGACGCCG
GAAGCGCTGG ACGCCCTCTA CAGCGGCACG GCGATCTTCG CCCGGCCGGC CGCTCGCAGC
GACGACCGCG CCGGCAACTT CGCCCAGGCG GCCCCCAAGC ACTGGCTGAA GGAGCCGCTT
AGAGCCTGCT GGCCCGCCTA CGCCGAAGTC GGCGTCGCCG CCCTGGCCGC CAACGTCCTG
GCGATCTCCA CCGCGCTGTT CGCGATGCAG GTCTACGACC GGGTCGTTCC CAACGCCGCC
TTCGATACGC TGTGGGTGCT GGCCAGCGGC GTGGCGCTGG CCGTGCTGCT GGAGTTCCTG
CTCAAGGGGC TCAGGGCGCA TCTGCTCGAG GTGATCGGCA AGCGTCTGGA TCTCGAACTC
TCGTCGAAAC TCTTCGAACA GGCGGTCCGC CTGCGTCTCA ACGCCAAGCC CGCCTCCACC
GGCGCCTTCA CCAGCCAAGT GCGCGAGTTC GAATCGGTCC GCGAATTCTT CACCTCCGCC
ACCGCCGGCG CCATCAGCGA CCTGCCCTTC GTGGCGCTGT TCGTGTTGAT CATCGCCTGG
ATCGGCGGCC CGGTGGCGTG GGTGCCGGTG GCCGCCATCG CCGGCATGAT CCTCCCCGGG
CTGCTGCTGC AGCGCCATCT GGCCAGACTG GCGCGCGAGA ACCTGCGCGA GGGTGCGGTC
AAGAACGGCG TGCTGCTGGA GTCGCTGGAT CAGCTCGAGA CCGTCAAGGC GACGCGGGCC
GAGGGCAGAA ACCTGGCGCT GTGGGAGTCG CTGTCGGCGC AGCTCTCCAA CGCCTCGATC
CGGCTGAGGG CGGTCACCAG CATGCTGACC CATTCGGCCT CGTTGCTGCA GCAGCTGGGG
TATGTCGGCA TCGTCATCGT CGGCGTCTAT CGCATCAGTG CCGGCGACAT GACCATCGGT
GCGCTGATCG CCTGCTCCAT CCTCGGCTCG CGGGCCATCG CTCCGATGGG CCAGACCAGC
GCCCTGCTCG CCCGTTGGCA GCACGTCAAG GCGGCGGTCG AAGGGTTGGA CGAACTAATG
CAGGCTCCCA ACGAAAGCGG GGCTGGCCAG AAAGTCCGCA AGCCCCGGCT CCACGGCGAC
TATCGCCTGG AAGAGGTCGT GGTCCGCCAT TACGAAGAGG GGCCGGCCGC GCTGAAGATC
GACGAACTGA CGATCGAGGC GGGCTCACGG ATCGCGCTGC TGGGCGGCAA TGGCGCCGGG
AAATCGACGC TGCTGCGGCT GCTTTCGGGC TTCGTCGAGC CGACCGCCGG CCGGGTGATG
CTAGACGACA TCAATATCAC CCAGATCGAA TCCGCCGACC GGCGTCGGGC GATCGGCTAT
CTCCCCCAGG ATATCGCGCT GTTCTACGGC ACCCTGCGGG ACAACCTGAC CCTGGATGGC
GCGGCCTACG AGGACGAGGA GATCTTCCAG GCGCTGGACA GCGTCGGCCT GGGCCGCTTC
GTGCGCAGTC ATCCCCAAGG GCTGGAGCTG CCAATCGCCT CCAGCGGCAG CGTCTCCGGC
GGGCAGCGTC AGGCCATAGG TCTCGCCCGG CTGGTGCTGC AGGACCCCCG CATCGTACTG
CTGGACGAGC CCACGGCCGC CTTCGACCAG AACAACGAGA AGCGCGCCGT GGCATTCCTC
AAACGGTGGA TGGAGGGCCG CACGCTGATC GTGTCGACCC ACAAGAAGCC GCTGCTGGAG
CTGACCGGTC GCGCCATCGT GCTGCGCGAC GGCAAGCTGG CGATGCAGGG CGACCTCGAT
CAGGTCGTGC AGGGCAATCG GGGCGCTTCC GGCAGCCCGA CCCCGCGGGA GGGACGTTAG
|
|---|
| Protein sequence | MSLSASERFT DPVDESNDPL REGMVLLCRR LDRPTSLSEL GDGLPLEQGR LPLREVSRAL
RRAGVSARVS RRSLKDISPR LLPALLILDN GDTALLESLD AGEARIALPE ADGGEETLTP
EALDALYSGT AIFARPAARS DDRAGNFAQA APKHWLKEPL RACWPAYAEV GVAALAANVL
AISTALFAMQ VYDRVVPNAA FDTLWVLASG VALAVLLEFL LKGLRAHLLE VIGKRLDLEL
SSKLFEQAVR LRLNAKPAST GAFTSQVREF ESVREFFTSA TAGAISDLPF VALFVLIIAW
IGGPVAWVPV AAIAGMILPG LLLQRHLARL ARENLREGAV KNGVLLESLD QLETVKATRA
EGRNLALWES LSAQLSNASI RLRAVTSMLT HSASLLQQLG YVGIVIVGVY RISAGDMTIG
ALIACSILGS RAIAPMGQTS ALLARWQHVK AAVEGLDELM QAPNESGAGQ KVRKPRLHGD
YRLEEVVVRH YEEGPAALKI DELTIEAGSR IALLGGNGAG KSTLLRLLSG FVEPTAGRVM
LDDINITQIE SADRRRAIGY LPQDIALFYG TLRDNLTLDG AAYEDEEIFQ ALDSVGLGRF
VRSHPQGLEL PIASSGSVSG GQRQAIGLAR LVLQDPRIVL LDEPTAAFDQ NNEKRAVAFL
KRWMEGRTLI VSTHKKPLLE LTGRAIVLRD GKLAMQGDLD QVVQGNRGAS GSPTPREGR
|
|---|
| |