| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_0027 |
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| Symbol | |
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| ID | 4026370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chromohalobacter salexigens DSM 3043 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007963 |
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| Strand | - |
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| Start bp | 32610 |
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| End bp | 34043 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637965179 |
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| Product | sigma-54 factor, interaction region |
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| Protein accession | YP_572091 |
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| Protein GI | 92112163 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.640568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCACG GCACTCTCAT GCCCGAACAA TTGCTGGCCA TCCTCAATGC GCTTGAAGAT
GGCATCTTCA TCACCGATCT CGGGGGCCAT CCGCTATGGG TCAACCAGGC GAGCCTGTCC
CAGCTCGAGA CCACCGAAGC GCACCTCTAC GCCAGCGATG TCTATCAGCT GGAGGAAGAG
GGTGTCTTCT CTCCCTCGGT CACTCGGTTC GTGATCGACG AGCGTCGTCC CGTCAGCGTG
GTTCACCGCT ATCGCGGCAA GGACTACCTG GTCAACGGCA GCCTCTTTCA TCTGGACAGC
AACGACTCAG GCGAGCCGGA TGCCGTGCTG GTGCAGACCC GCAACCTGGA CCGCGATGTG
CTGGCATCCC GTTCGCCGGA CACCACTCAG GCATTGCTCG ATCATGTCAT GCATCAGCTG
AAACGCATTC GCCAGGATCA GGTCGCGACG GAGGCCAACC CGGCCGCTCC CAGTCGCAGC
CCCCGCTATC GCCAGTGCCT GGAACGCCTG GATCGCGCCG CCGCCAGTGA CACGACCGTC
CTGGTGAGCG GTGAAACCGG TGTCGGCAAG AGCTGGCTGG TCAATCGACT GCACCAGTTC
AGCCCGCGCT CGGAGCGACC GCTGATTCAT GTCAATTGCG CGGCCATCCC CGAGGCCCTG
CTCGAGGCCG AGCTGTTCGG TCACGAGCGT GGCGCTTTCA CCGGTGCCCA CCGCGACGGC
CGGGTGGGTT ACGTCGCCCT GGCCGAGGGC GGCACCCTGT TCCTCGACGA GATCGGCGAG
CTGCCGCTGG CGCTGCAGCC CAAGCTCCTG CAGTTGCTTC AAGAGCGCGA ATACCACCCT
TTGGGCGGCA GCACGCGCAA GGCCGATGTA CGCATCGTCG CTGCCACGAA CACGGACCTT
CCCGCCCGAG TGCGGGACGG CAGCTTTCGC GCCGACCTGT TCTATCGGCT GAACATCGTG
CCCATCGAGG TGCCGCCGCT GCGCGAACGT GCCGAGGACA TTCCCCATCT CGCCAACCAG
CTGCTCGCCC ATATCTCGCG CCGACACAAG CGGCGCCTGA CGCTCGAGCG AGATGCCTTG
CGGGCCCTGA CCCGTCATCA CTGGCCGGGC AATGTGCGTG AGCTGGAAAA CCTGCTGGAA
CGGCTAAGCG TTTTCTGCGA GGACGAGACC ATCCGGGTTG CCGACCTGGC CCCGGACCTC
GATATCGAAC CCGCCGGTTC CGCACTGCCC GAAGGGGACA CACAGCCCCT GCCGCAACGG
TTGGCGCAGC TGGAACACCA GGCCATCCGC GAGGCCCTGG CACTCACCGG CAGCACCCGC
AAGGCAGCAC GGACACTGGG CGTCACGCAG TCCTGGTTGA TGCGCCGAAT CAAGCGCCAT
GCCATCGACA CTGACACCCC GACGTCAGAA CACACGTCTG TCGACGCATC ATGA
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| Protein sequence | MNHGTLMPEQ LLAILNALED GIFITDLGGH PLWVNQASLS QLETTEAHLY ASDVYQLEEE
GVFSPSVTRF VIDERRPVSV VHRYRGKDYL VNGSLFHLDS NDSGEPDAVL VQTRNLDRDV
LASRSPDTTQ ALLDHVMHQL KRIRQDQVAT EANPAAPSRS PRYRQCLERL DRAAASDTTV
LVSGETGVGK SWLVNRLHQF SPRSERPLIH VNCAAIPEAL LEAELFGHER GAFTGAHRDG
RVGYVALAEG GTLFLDEIGE LPLALQPKLL QLLQEREYHP LGGSTRKADV RIVAATNTDL
PARVRDGSFR ADLFYRLNIV PIEVPPLRER AEDIPHLANQ LLAHISRRHK RRLTLERDAL
RALTRHHWPG NVRELENLLE RLSVFCEDET IRVADLAPDL DIEPAGSALP EGDTQPLPQR
LAQLEHQAIR EALALTGSTR KAARTLGVTQ SWLMRRIKRH AIDTDTPTSE HTSVDAS
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