| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4633 |
|---|
| Symbol | |
|---|
| ID | 4025783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007961 |
|---|
| Strand | + |
|---|
| Start bp | 84906 |
|---|
| End bp | 86363 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637965116 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_572024 |
|---|
| Protein GI | 92109738 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.706868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG TCCGTGGCGC GTGGCTGCAT CAGAGTCTTC TTCGAAATAG TCGGTCGGTG
CTGGTGCTGG CCGGTTCTCT TGTTCTCTCC GGTTGCGCGA CTTTCTCGCC GGATCGCGGC
ATGGGCGTCG TCGCCGACAT CGCCGGCAAC ACGATCAGGA AGGACGTGAT CGCGATCCGC
TCGGTGGACG ACGCGCAGCG GGCGGACGAC AGCGTCAAGC GTCTGCTGCA CCGGACGCTC
AACGTCGAAA CCGCGGTTCA GGTCGCGTTG CTCAACAATC GCGGGCTTCA GGCGTCGTAC
AATGAGTTGG CGTTGGCCGA AGCCGATCGT GTTCAGGAAA GCCTGCCGCC CAATCCGACC
TTCTCGGTCT CGCGCATTTC GGGCAACGGC GCCACCGAGA TCGAGCGCCA GGTCGTGGGA
GACATCCTCG CACTTGCGAC GCTGCCGTTC CGTTCGGAGA TCGCGAAGCA GCGTTTCCGG
CAGGCACAGC TTCGCGCCGC ATTGGAAACG CTTCGGCTTG CCGCCGATGT CAGACGCGAT
TTTTACCGCG CGGTAGCCGC AAACGAACTC GTCGCCCTTC TCAGCGACGC CAAGGCCACC
GCCGAATCCA CCGCGCAACT GTCGAAGAAA CTTGGCGAGA CAGGCTCCCT TAACAAGCTC
GATCAGGCCC GTGAGCAGGT CTTCTATGCC GAAACCACCG CGGATCTTGC GTCGCTGCGT
CAGGAGGCGA CGAGTTCGCG CGAAGCCCTG GCGCGGCTGT TGGGCCTGTG GGACGGCGAT
CTCAATTTCA AACTGCCGAG CCACCTGCCG GCTCTGCCGC AGCGTCCGCG GACCTTGCCG
CGCATCGAAG TCGACGCCGT CGAACACCGT ATCGATCTGC AGGTCGCCCG CATCGAACTC
GACGCGCTCG CAAAATCGCT GAACCTCACC GAAGCCAGCC GGTTTGTCAC GATGCTCGAT
ATCGCCGGCA TCGACCGCAA GACCCGCGAT CCCGAAAGCA CGCCCTTCCG CGAACGCGGG
TTTGACATCC AGTTCCAGAT CCCGATCTTC GACGGCGGCG AGGTGAGAGT CCGGCAGGCC
GCCGAGACCT ACAACCAGGC ATTCAATCGT CTGACCGAAA AGGCCGTCAA CGTCCGGTCG
GAAGCACGCG ACGCCTACCG CAGCTATCGT TCCTCCTATG AAATCGCCAG CCAGTATCAG
CGCGAGGTCC TGCCGCTGCG CAAGATCATC ACGGAAGAGA TGCAGCTGCG CCTCTCGAGC
ATGCAGGTCG ACGTCTTCGC GCTGCTGACG GAAGCGCGTC AACGGATTGC CTCGTTGCGT
GCGGCGATCA TAGCCAAACG CGCCTTCTGG TTCGCGCAGT CCGACCTGCA AACCGCCGTC
AACGGCGGCG GCAGCGGAGA AGGTCAAAGC AAATCCCCCA CGACCACCGC CCGGACGGGC
GGCAACGGCG GCCATTGA
|
|---|
| Protein sequence | MKIVRGAWLH QSLLRNSRSV LVLAGSLVLS GCATFSPDRG MGVVADIAGN TIRKDVIAIR
SVDDAQRADD SVKRLLHRTL NVETAVQVAL LNNRGLQASY NELALAEADR VQESLPPNPT
FSVSRISGNG ATEIERQVVG DILALATLPF RSEIAKQRFR QAQLRAALET LRLAADVRRD
FYRAVAANEL VALLSDAKAT AESTAQLSKK LGETGSLNKL DQAREQVFYA ETTADLASLR
QEATSSREAL ARLLGLWDGD LNFKLPSHLP ALPQRPRTLP RIEVDAVEHR IDLQVARIEL
DALAKSLNLT EASRFVTMLD IAGIDRKTRD PESTPFRERG FDIQFQIPIF DGGEVRVRQA
AETYNQAFNR LTEKAVNVRS EARDAYRSYR SSYEIASQYQ REVLPLRKII TEEMQLRLSS
MQVDVFALLT EARQRIASLR AAIIAKRAFW FAQSDLQTAV NGGGSGEGQS KSPTTTARTG
GNGGH
|
|---|
| |