| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4588 |
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| Symbol | |
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| ID | 4025356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007961 |
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| Strand | + |
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| Start bp | 41155 |
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| End bp | 42996 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637965085 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_571993 |
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| Protein GI | 92109707 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0646445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCTTG CGACAATCAC CAACTGGGCT TACGGAGCGA CTCTTCTGCT GACATTCGCG
TCGGGCGCGA CGATGCTGCT CGCTTCGAAC GTCCAGGACG GGGAACGAGC CGCGGTTGCG
CAGCGCGAGC TCCTGGACCA GGCAAGCGCC AAGATCGCGA CCGAAGTCAC ATCGCTCAGC
GACAAAGCGC GCGAATACGT CATTACGGGC GACCCCGTGC ATCTCGACAT CTACCAACGC
GACGTAACAG CGCTGCGATC GGTCGAGGAG AGGGTCCGGA AAATCGAGGA TCTCGGCGCA
AGTCCTGACG AGGTCAACGC GCTGACTGAC GCAATGCGCC TGGCCGATGC TCTTCAGGAT
GAGCAGCAGG ACGCGGTCAA GATTCGCCAG CAGGGCGATG CGGACCGGGC GCGCAGCATC
CTGTTCGGCA TCGAGTATGA TCGCCAGCTG GATCGGGTCG CCGCAGACGT GGAGCGATTT
CAATATCGCC TCGATCAACG GACAGACAGC GAAGTCGCCG CAGCCGTCAA CGTCTCGAAA
CTCTGGAAGA CCTTTTCGGA GGTCGTCCTC GGCGTCACCG GCCTATTGTT TCTCTGCGTC
CTTTACTTCG TCTTCAAGCG GCGTGTGTTG CGTCCTGTCG TCAAGCTGAG CGACGTGGTC
AACCGTCTGG CGGCCCAAGA CTATGCCGTC GAGCCTCCGG ACTACGGCGA GATCGATGAG
ATCGGCGACA TGGCGCAGGC CATTCGCGTC TTCCGCGAAA ACGGCCTTGA ACGCCAGCGG
CTGGAAGAGG AGCGGAATGC GGATTTCGCA AAGCGCGCGC TCTTGTCCCG GATGACACAG
CGCATGCAGG AATGCGAGAC GATGGCTCAG CTTGAGCGGG TGATCGGGGG CTTTGTCCCG
GAGATTGCGC CTGGCCTCGC AGGTCGCCTT TATCTCTTGG ATGAAAGCCG CAATCTTTTG
GTTGAGGCCT GCTCGTGGCT TGGAGCGGTC CGTTCGCCTC GCGAGTTTCC CCCTATTGCG
TGCTGGGCGC TGCAACGAGG CGAGTTGCAT CGCCCTAAGG GGTGTGCCGC CGATGTCGTC
TGTGATCACC TCGGCGACGA ACAGCCGATC GACTCAATTT GCCTGCCGTT GAACGCGCAG
CGGACCACGG TCGGGCTTCT CTACCTTGAG CCGCGCAGTG ACCTCTGCCA GCCCGACCCG
AACGTGCCGG AAATCTATCT CAAGATACTC GCGGAAAACG TCGGTCTCGC AGTCGGCAAT
CTGCGCCTGC GAGACAGGTT GCGCGCCATG GCCATGCTCG ATCCGCTGAC CGGCCTTGCG
AACAGGCGCC AGCTTGAGAC TGTCCTCGAA TCCAGATTGT TGGAGGCGAA CAGGGCCAAC
CAGCCCATCA GCTGCATCAT GCTGGACGTC GATCATTTCA AGCGTTTCAA TGACGATTAC
GGACATGATG CCGGCGACGT CGTCCTTCGT GCGGTCGGCG ATCTGCTAAA GCGATCGACG
CGCGACACTG ACGCTTTTCG GTATGGCGGG GAGGAGTTCC TGTTGCTCAT GCCCGACATG
GGGGCGGAGC ACGCACTTCT GCGCGCCGAG GAGACTCGGT GCAAGATCAA AGACCTGCAG
GTCGAGCACG GCGGACGCGA ACTCGGGACA ATCACCGCCT CTCTTGGCAC GGCGACTGCG
CCGGATCACT GCATGTTCAG CCAGCTTGTT CGAACGGCAG ATGCCGCCCT ACTGCGCGCC
AAAGAGTCGG GGCGCAATTG CGTGGTCCAA GCCGAGCAAA GGGGGATCGC GCCGGAGGAA
GCTGCGCAAA CATCGAGGTC GGTCTCGGCC GACAGCGAGT AG
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| Protein sequence | MRLATITNWA YGATLLLTFA SGATMLLASN VQDGERAAVA QRELLDQASA KIATEVTSLS
DKAREYVITG DPVHLDIYQR DVTALRSVEE RVRKIEDLGA SPDEVNALTD AMRLADALQD
EQQDAVKIRQ QGDADRARSI LFGIEYDRQL DRVAADVERF QYRLDQRTDS EVAAAVNVSK
LWKTFSEVVL GVTGLLFLCV LYFVFKRRVL RPVVKLSDVV NRLAAQDYAV EPPDYGEIDE
IGDMAQAIRV FRENGLERQR LEEERNADFA KRALLSRMTQ RMQECETMAQ LERVIGGFVP
EIAPGLAGRL YLLDESRNLL VEACSWLGAV RSPREFPPIA CWALQRGELH RPKGCAADVV
CDHLGDEQPI DSICLPLNAQ RTTVGLLYLE PRSDLCQPDP NVPEIYLKIL AENVGLAVGN
LRLRDRLRAM AMLDPLTGLA NRRQLETVLE SRLLEANRAN QPISCIMLDV DHFKRFNDDY
GHDAGDVVLR AVGDLLKRST RDTDAFRYGG EEFLLLMPDM GAEHALLRAE ETRCKIKDLQ
VEHGGRELGT ITASLGTATA PDHCMFSQLV RTADAALLRA KESGRNCVVQ AEQRGIAPEE
AAQTSRSVSA DSE
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