| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4562 |
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| Symbol | |
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| ID | 4025330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007961 |
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| Strand | - |
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| Start bp | 18612 |
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| End bp | 19274 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637965061 |
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| Product | conjugal transfer protein TrbF |
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| Protein accession | YP_571969 |
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| Protein GI | 92109683 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.905041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCGCGC GTAATCCGCC CGACAATCCC TATCTCGCCG CGCGCCAGGA ATGGAACGAG
CGCTACGGCT CCTATGTCAA GGCGGCCGCC ACATGGCGCG TCGTCGGCAT CGTCGCCATG
CTGATGGCGG TGATCGGCTT CGCCTACGCG TTGTTCGAGA GCACGCAGGT CAAGCTCGTC
CCCTACATCG TCGAGGTTGA CAAGCTCGGC ACGGCGGTGA ACGCGGGCTT CCCGCAGCAG
ATCGAATATG CCGATCCACG CGTGGTGCGC GCGACACTCG GAAGCTTCGT CTCGAACTTC
CGCTCGGTGA CGCCCGATGC GGTGGTGCAG AAGCAATATA TCGATCGGAC CTACGCGTTG
TTGCGAACCT CGGATCCGGC CACGCAGAAG ATCAATGACT GGTTTCGCAG CAACTCGCCG
TTCGAGAAGG CGAGGACGAC AACGGTCGCC ATCGAGGTCA ACAACATCGT GGCTCTGTCC
AGCCAGACTT ATCAGATCGA CTGGACCGAA TTCGAGCGCG ACCGGAAAGG AAAGCAAACC
GGCGAGCACC GCTTTCGCGG CATCGCCACT GTGACGCTGA CTCCACCCCA GGACGAGCAA
ACCATCCGGC TCAATCCGAT CGGCCTCTAC CTGCGTGATT TCGACTGGAC GGCGCAACTA
TGA
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| Protein sequence | MAARNPPDNP YLAARQEWNE RYGSYVKAAA TWRVVGIVAM LMAVIGFAYA LFESTQVKLV
PYIVEVDKLG TAVNAGFPQQ IEYADPRVVR ATLGSFVSNF RSVTPDAVVQ KQYIDRTYAL
LRTSDPATQK INDWFRSNSP FEKARTTTVA IEVNNIVALS SQTYQIDWTE FERDRKGKQT
GEHRFRGIAT VTLTPPQDEQ TIRLNPIGLY LRDFDWTAQL
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