| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4499 |
|---|
| Symbol | |
|---|
| ID | 4025510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007960 |
|---|
| Strand | + |
|---|
| Start bp | 141946 |
|---|
| End bp | 144711 |
|---|
| Gene Length | 2766 bp |
|---|
| Protein Length | 921 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637965004 |
|---|
| Product | putative DNA methylase |
|---|
| Protein accession | YP_571912 |
|---|
| Protein GI | 92109625 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1002] Type II restriction enzyme, methylase subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.154819 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCG TCGAGATTGA AGAAGCCATA TCGGCCCTGG CCGAGCGGCC GTTCGACGGC
GGCGAGTTCC CGTTCGCTTT CCTGCAAGCC TTCGGCAATA AGGAAACGAC GATCAAGAAG
CTGCGGGCAG GCGCGTCGAA TAGCTCCGAC CTGGGCGGCG TCCTGCAACG GAACCATATT
CATATCGCCG TCTGCGCGCC GGGCGCGGTC ACCAAGACCT TGGCAGCGCT GAAAGCCAGC
CCGGCCACTG CGAAGGCAAA GGCGCGTTTC ACCCTCGCGA CCGACGGCGC AGACTTTGAG
GCGGAGGAGT TGGACACCGG CGAAACCGTC GCCTGCGCCT ATGCCGACTT CCCCGATCAT
TTCGGTTTTT TCCTGCCTCT CGCCGGCATC ACCACCGTCA AGCAGGTCCG CGAAAGCTCT
TTCGACATCC GCGCCACGAG CCGCATGAAC CGGCTCTATG TCGAGCTTCT GAAAGACAAC
CCCGATTGGG GCACCGCCGC GCGCCGTCAT GACATGAACC ATTTCATGGT GCGGCTGATC
TTCTGCTTCT TCGCCGAACG CACCGACATC TTCCACGGTA TCGGCCTGTT CACCGACACC
ATCGCTCGGA TGAGCGCCAA GGACTCGTCG GACACCCATA AGGTGATCGG CGAATTGTTC
CTCTCCATGA ACACCAAGCG GGAGGACCGA GCGAGCGTCG GCATTCCCCG ATGGGCCGAC
GCCTTTCCCT ACGTGAATGG CGAACTGTTC TCCGGTAGCG TGGACACGCC GCGATTCAGC
AAGATCGCCC GCGCCTATCT TCTCCATATC GGCAGTCTCG ACTGGACGAA GATCAATCCG
GATATCTTCG GGTCGATGAT CCAGGCCGTC GCCGAGGACG AGGAACGGGG CGCGCTCGGC
ATGCACTACA CGTCCGTGCC GAACATCCTG AAAGTCCTCA ATCCGCTGTT TCTCGACGAT
CTGCGCGCCC GGCTTGCGGA AGCGGACGAC AATCCCCGCA AACTGCTGAA CCTCCGCAAT
CGCATGGCGA AAATCAGGGT CTTCGATCCG GCCTGCGGTT CCGGCAACTT CCTTGTCATC
GCCTACAAGG CCATGCGGGA GATCGAGGCT GAGATCAACA GGCGGCGCGG CGAGGCCGAC
CGGCGCACGG ATATCCCGCT CACCAACTTT CGCGGCATCG AGTTACGCGA CTTCCCGGCC
GAGGTTGCGC GCCTTGCCCT CATCATCGCC GAGTTTCAAT GCGATGTCCT CTATCGCGGG
CAGAAGGAAG CCTTGCAGGA CTTCCTGCCG CTCGACGCAC AGAACTGGAT CACCTGCGGC
AATGCTCTGC GGCTCGACTG GCTGAGCATC TGCCCGCCGA CCGGAACGGG CGTGAAGCTA
CAAGCGGATG ACCTGTTCAG CACGCCGCTC GATCAGGCGC AGATCGATTT CGAGAACCAA
GGGGGCGAGA CTTACATTTG CGGCAATCCT CAGTTCAAAG GAGCGCGAAA GCAAAGTCGG
GATCAAAAAA ATGACCTCTC GCTCCTGTTC CACGGAAATA TCGATTACAA GGACTGCGAC
TATGTAGTTG GCTGGTTCAT CAAAGCGTCA GAGTATTCGA CAACTTGCGG AGCCCCGTTT
GCCTTCGTCG CCACGAACTC GATTGCGCAA GGGGAACAGG TCGCACATCT GTGGTCGCGA
CTGTACGCAA AGAACTTACA TATTTTCTTT GCTCATCGAA CGTTCTTGTG GCGGAATAAT
GCATCGAATA ACGCCGGTGT GCACTGTGTA ATAGTCGGCG TGAGCAATAG AGCTTCCGGA
GCGAAGTTCA TTTACGAAGC TGATACGGCT CGTGAAGTCA ATTGTATTGG GCCTTACTTA
ATCCCTGGCG ATGAAATCTT CGTCGAAGCC GCAGACTCGC CGGTGTCGTC CGATTTGCCT
CGTATGATTA GCGGCAATAT GGCTCGTGAT GGCGGCAATC TGATTTTGTC CCGGGACGAT
ACTGAGGCGC TGCTATCGGC CCATCCGCAA GCGGTCTCGC TCATCAAGAA GCTTGTCGGA
ACGAAAGAGA TAAATCAGGG CAGCAAAAGA TACTGTCTCT GGATAACAGA TAAGGATGTT
CAGCGAGCTA AGGATATTCC TGAAGTCGCA CGGCGAATTG AACAAGTGAA AAAAGAGCGA
ACCGCATCTA CTGCAAAGAC GACCCGCGGC TACGCGAACA TCCCCCATAA ATTTGCACAG
AGATGTCACC GAGACGAGTC TTGCATCGGT ATTCCCAAAA CGATCACTGG AAACGACGCA
TATTTGACGC CGGATGTATT CGGATCAGAT GCCGTCATTA GCGACCTTGC CTTTGTAATA
TATCCTATGG ACATGGTTGC TTTTTCTATC ATCTCAAGCT CTCTGCACCT CATCTGGTCA
AAGACGGTAG CAGGCGGAAT GCGAGACGGG CTCAGATACT CATCTCAGCT GGCCTATCAT
ACCTTTCCAA TCCACAGGCT CACGGAAAAA AACAAGGCCG ACCTCAGCCG CTGCGCCGAG
AACATCCTGC TGGCGCGCGA GGCGAATTTC CCCGCAACTA TCGCCTACCT CTATGACCCG
GAGAATTTGC CGGACGATCT GCGCGCGGCG CACGAGCGCA ACGACGAAGT GCTTGAGCGA
ATCTATATTG GCCGTCGTTT CCGCAATGAC ACGGAGCGCT TGGAAAAACT GTTTGAGCTT
TACACCAAGA TGATCGCGTC GCCGGGAGCC GCGGCGAAGA AGAAAAAGAC GGAGGTAAGC
GCGTGA
|
|---|
| Protein sequence | MNAVEIEEAI SALAERPFDG GEFPFAFLQA FGNKETTIKK LRAGASNSSD LGGVLQRNHI
HIAVCAPGAV TKTLAALKAS PATAKAKARF TLATDGADFE AEELDTGETV ACAYADFPDH
FGFFLPLAGI TTVKQVRESS FDIRATSRMN RLYVELLKDN PDWGTAARRH DMNHFMVRLI
FCFFAERTDI FHGIGLFTDT IARMSAKDSS DTHKVIGELF LSMNTKREDR ASVGIPRWAD
AFPYVNGELF SGSVDTPRFS KIARAYLLHI GSLDWTKINP DIFGSMIQAV AEDEERGALG
MHYTSVPNIL KVLNPLFLDD LRARLAEADD NPRKLLNLRN RMAKIRVFDP ACGSGNFLVI
AYKAMREIEA EINRRRGEAD RRTDIPLTNF RGIELRDFPA EVARLALIIA EFQCDVLYRG
QKEALQDFLP LDAQNWITCG NALRLDWLSI CPPTGTGVKL QADDLFSTPL DQAQIDFENQ
GGETYICGNP QFKGARKQSR DQKNDLSLLF HGNIDYKDCD YVVGWFIKAS EYSTTCGAPF
AFVATNSIAQ GEQVAHLWSR LYAKNLHIFF AHRTFLWRNN ASNNAGVHCV IVGVSNRASG
AKFIYEADTA REVNCIGPYL IPGDEIFVEA ADSPVSSDLP RMISGNMARD GGNLILSRDD
TEALLSAHPQ AVSLIKKLVG TKEINQGSKR YCLWITDKDV QRAKDIPEVA RRIEQVKKER
TASTAKTTRG YANIPHKFAQ RCHRDESCIG IPKTITGNDA YLTPDVFGSD AVISDLAFVI
YPMDMVAFSI ISSSLHLIWS KTVAGGMRDG LRYSSQLAYH TFPIHRLTEK NKADLSRCAE
NILLAREANF PATIAYLYDP ENLPDDLRAA HERNDEVLER IYIGRRFRND TERLEKLFEL
YTKMIASPGA AAKKKKTEVS A
|
|---|
| |