Gene Nham_4439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_4439 
Symbol 
ID4025450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007960 
Strand
Start bp86874 
End bp87677 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content61% 
IMG OID637964947 
Productconjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_571855 
Protein GI92109568 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAAGG GTTGTGCCGT CTTAACTGTC GTACTCTGCA TCACGGCCGG CGCCGCCTTC 
GCGGAGGCGC TGCCGCGGCC GGGTCGCGTC GATTCGCGAG TGCGGGACGT CGTCTACAAC
AAGGACAACG TAACCGCGAT CGATGCGAGC TATGGCACCT CGACGATGAT CGAGCTACAG
CCCGACGAGA AGATCGAAAC GCTGGCGCTC GGGGATTCAA TCGCCTGGAA GGTCGAACCG
AACCGCAAGG GTGACGTCAT CTTCGTCAAG CCGGTTGAAA AGAACGCCCA GTCGAACCTC
AACGTCGTCA CCGACAAGCG CATCTATTCG TTCCTGCTGC GCTCGAACAC GCGGCCGCCG
GCAGGGCAGA TCTACGCGGT GCGATTCCGG TTTCCGGATG ACGAGGCCAG CGCGAAGCTC
TTGGCTGAAG CCAAGGAGCG CGCCGCCAAT CCGAATCTCA AGGATCTCAA CATCGCCAAC
GCCAACAGCG ATTACGGCTA CAAGGGCTCG TCAGTGAACA AGCCGGTTGC CGCGTTCGAC
GATGGGACCA AGACCTGGTT CCGCTTCGAG GGCGAGACGC CGGCGATCTA CATCGTCGAT
GGTGACCGCA ATGAAAGCCT CGTCAATTTC CGGACCGAGG GGCCTTACGT CATCGTCGAC
AAGGTGTCGC CGCAGTGGAC GCTGCGCAAC GGCCAGGAAT CGACCTGCGT CTTCAACCGC
CGTCTGAACA ATGTGCATGA GCCGAACGGG CTCGAGCCCT ATGCGCCGCA GCGTGTGGGC
TCGGCAACGA ATCTGGGAGG TTGA
 
Protein sequence
MIKGCAVLTV VLCITAGAAF AEALPRPGRV DSRVRDVVYN KDNVTAIDAS YGTSTMIELQ 
PDEKIETLAL GDSIAWKVEP NRKGDVIFVK PVEKNAQSNL NVVTDKRIYS FLLRSNTRPP
AGQIYAVRFR FPDDEASAKL LAEAKERAAN PNLKDLNIAN ANSDYGYKGS SVNKPVAAFD
DGTKTWFRFE GETPAIYIVD GDRNESLVNF RTEGPYVIVD KVSPQWTLRN GQESTCVFNR
RLNNVHEPNG LEPYAPQRVG SATNLGG