| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4044 |
|---|
| Symbol | |
|---|
| ID | 4025397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007959 |
|---|
| Strand | - |
|---|
| Start bp | 2613 |
|---|
| End bp | 3593 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637964633 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_571541 |
|---|
| Protein GI | 92109253 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCTGA CCCTCAGACA GCTCCAGATC TTCGACGCGG TGGTGCGTCA GCAGAGCTTT
ACGCGCGCAG CCGACGCGCT GCACCTGACC CAGCCGGCGG TCTCGATGCA GATGCGGCAC
CTAGAAGAGC AGATCGGCGT GCCGCTGTTC GACCACGTCG GAAAGCAGAT CCAGCCGACC
GACGCCGGTC GCGAGTTGCA TCGCCACGCC ACGCTCATCA GCGCCAAGAT GCGCGACCTC
AAGTCTGCGA TGGAGGAGTT CCGTGGCATC CATCGCGGGG AACTCGACCT CACTGTGGCC
AGCACGGCCA ACTACTTCAT GCCCAAGCTG ATTGCAGCGT TCTGCGCCTG CCACGCCAAG
GTGCAGGTGC GGCTGCAGGT GTCCAACCAG ACACACATCC TCGAGATGCT CTCGGCGTCG
AACCAGGATC TGGCCATCAT GGGGCAACCG CGAGAGGATG CCGAGCTCGT CGCGCGCGGG
TTCCTCGACA ACCCGCTGGT GGTCATCGCC TCGCCCGCGC ATCCCCTGGC CAAAAGCCGG
CAGATTCCAC TGGAGCAACT GGGTCGCCAG CGCTTCATTA CCCGCGAGCC TGGCTCGGGC
ACGCGCAATG CGGCAGAGCG GCATTTTTCG CGTCACGGCG TAGAATTTCA TTCGGTGATG
GAGATGAGCA GCAACGAGGC CATCAAGCAG GCAGTCGATG CCGGGCTGGG GTTGGGCATT
CTGTCGCTGC ACACCCTAGA GCTGGAGCTG GCGATGCGCC GCCTGGTCAT CCTCGACGTG
GAGAGCTTTC CGCTCGTGCG GCAATGGTTC GTCGTGCACC GCAAAGGTAA GCGGCTATCG
GCGGTGGCGC AGTCCTTCCT GGCGTTCCTT ACCCAGCAGG CGCGCCCGCT GACCTCGCCC
AAGCATCCGC AGCCCACCCC GCTACGCCAT GAACTTGGCC AGGCGGCCGA CCTGGATGTC
GCTGACGAAA ATCACCCCTG A
|
|---|
| Protein sequence | MHLTLRQLQI FDAVVRQQSF TRAADALHLT QPAVSMQMRH LEEQIGVPLF DHVGKQIQPT
DAGRELHRHA TLISAKMRDL KSAMEEFRGI HRGELDLTVA STANYFMPKL IAAFCACHAK
VQVRLQVSNQ THILEMLSAS NQDLAIMGQP REDAELVARG FLDNPLVVIA SPAHPLAKSR
QIPLEQLGRQ RFITREPGSG TRNAAERHFS RHGVEFHSVM EMSSNEAIKQ AVDAGLGLGI
LSLHTLELEL AMRRLVILDV ESFPLVRQWF VVHRKGKRLS AVAQSFLAFL TQQARPLTSP
KHPQPTPLRH ELGQAADLDV ADENHP
|
|---|
| |