Gene RPD_4404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_4404 
Symbol 
ID4024929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4875009 
End bp4875674 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content69% 
IMG OID637964613 
Productwinged helix family two component transcriptional regulator 
Protein accessionYP_571521 
Protein GI91978862 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.656013 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGTGC TGGTGGCCGA GGACGATAGC CGGATCGCGT CGGATCTCGC GCGCGGCCTG 
ACGGAGGCTG GTTACATCGC CGAATGCGTC GCCGACGGCG AAGAGGCGTG GTTTCGCGGC
GACACCGAGG ACTACGCCGC GATCATTCTC GATCTCGGCC TGCCCAGGCT CGACGGGCTG
ACCATTCTGA AGCGCTGGCG CGAAGGCGGC CGCCGCACCC CGGTGCTGAT CCTGACCGCG
CGCGGCAGCT GGGCCGAGCG CGTCGACGGC ATCGACGCCG GCGCCGACGA TTATTTGCCG
AAGCCGTTCC GGATGGAGGA GCTGCTGGCG CGGCTGCGCT CGATCGTGCG CCGCTCGGCC
GGCCACGCCT CATCGGTCGT CACCATCGGC GACGTCACCC TCGACGAACG CCAGATGCAG
GTCACCGTGC GCGGCCAGCC GGCGCCGCTG TCGCCGCTGG AGTACCGGCT CGCGTCCTAT
CTGGTGCTGC ATCGCGGCCG GGTGGTGTCG CAGTTCGAGT TGAGCGAGAG CATCTACGGT
CAGGACGACG CGCATGATTC CAACGCGATC GAGGTGCTGG TCGGCCGCGT CCGCAAGAAG
CTCGGCCCCG AACTGATCGA GACCCGGCGC GGCTTCGGCT ACATCGTGGC CGGGGATAGC
AGGTGA
 
Protein sequence
MRVLVAEDDS RIASDLARGL TEAGYIAECV ADGEEAWFRG DTEDYAAIIL DLGLPRLDGL 
TILKRWREGG RRTPVLILTA RGSWAERVDG IDAGADDYLP KPFRMEELLA RLRSIVRRSA
GHASSVVTIG DVTLDERQMQ VTVRGQPAPL SPLEYRLASY LVLHRGRVVS QFELSESIYG
QDDAHDSNAI EVLVGRVRKK LGPELIETRR GFGYIVAGDS R