Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4347 |
Symbol | |
ID | 4024871 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 4809546 |
End bp | 4812422 |
Gene Length | 2877 bp |
Protein Length | 958 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637964556 |
Product | GGDEF domain-containing protein |
Protein accession | YP_571465 |
Protein GI | 91978806 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCGTCTGA TCAGATGCCT TGCGCTTCTG GCGTTGGGCT TGATGCTGAT TGCGGTTGCC CCGCAGGCGC ACGCGCTCGA CGCTGTCAGC GTCCGCAGCG ACGCGCCCGC GATCGATCTC ACCGGCGTAC TCGAGCATCA GCGCAGCGAT ACCGACCGCA TCCAGGTCTC GACCGCGCCC GGCAATGACG GCATCGTCCG CCGCATCGAG GTGCGCGCCC GCGAGGGCGG CCAGCATTGG GTAGTGTTCG CGCTCGCCAA CAACACCGAC GATCAGCTCG ACCGCCTGAT CGTCGTGCCG CATTATCGCA TGGTGGCGTC CGGCCTGTTC TGGCCCGACC TCGGCCTGTC GCGCATCGCG ACCATCACGC CGTCGACCGG CGACCGCCCG GAGCGGCAGG ACTCGACGAC CGCGGATATC TTCCGCGTCA CGCTCGATCC CGGCTCGGTG ATCACCTTCG TCGCCGAATT GCGCACCGAC AAGCTGCCGC AGCTCTATCT GTGGGAGCCG GAAGCCTACA AGGACAAGGT CAATTCGTTC ACGCTGTACC AGGGCATCGT GATCGGGATT TCCGGCCTGC TGGCGCTGGT GCTGACGATC CTGTTCGTGG TCAAGGGCAG CATCATGTTC CCCGCCGCCG CGGCGCTGGC CTGGGCGGTG CTGGTCTATA TCGGCATCGA CTTCGGCTTC TGGAGCAAGG TGTTCGACAT GTCGGCCGGC GCCGAGCGCA TCTGGCGCGC GTCGGGCGAA GCCATTCTGG CGGCCACGCT GCTGGTGTTC CTGTTCGCCT ATCTCAATCT CAGCCGCTGG CACGTGCGCT ACTCGCACAT CACGCTCGGC TGGCTCGCCT TCCTGGGTTC GCTGGTGGCG CTGGCGCTGT TCGATCCGGC GGTGGCGTCC GGCATCGCGC GGATGTCGCT GGTACTGATC GCCTTCGCCG GCTTCACGCT GATTGTGTAC CTGTCGACCC ACGGTTTCGA CCGCGCCGTG CTGCTGATCC CGACCTGGTT CCTGCTGGTG ATCTGGGTGA TCGCCTCGGG CATGACCGTG GCAGGCTCGG TGACCAACGA CATCGTCGGC CCGGCGCTAC TCGGCGGCCT GGTGCTGATC GTGATGCTGA TCGGCTTCAC GGTGATGCAG CACGCCTTCG CCGGCAGCGG CGCGACCGGC GGCGTGGTCT CCGACGTCGA GCGACGGGCG CTGGCGCTGA TCGGCTCCGG CGACCTGATC TGGGACTGGG ACGTCTCCGC CGACAAGGTC TTCACCAGCC CGGAGACCGA AGCGCTGCTC GGCCTGAAGC GCGGCGCGCT GGAAGGCTCG GCCGCGACCT GGCTCGAAGT GCTGCACCCG CTCGATCAGG ACCGTTTCCG CGCCGCGCTC GACTCGGTGC TCGACCAGCG CCGCGGCCGG CTGACCCAGC ATTTCCGGCT GCGCACCCCC GACGGGCATT TCATGTGGTT CGCCCTGAAG GCGCGGCCGG TGGTCGGCGC CGATGGCGAA GTGACCCGCG TGGTCGGCAC GCTGACGGAC GTCACCGAAG CCAAGAACGC CGAAGAGCGG ATGCTGCACG ACGCGGTGCA CGACAATCTC ACCGGCCTGC CGAACCGCAA GCTGTTCATG GACCGGCTCG GCGCCGTGGC GAATTTCGCC AAGACGATGC CGAACCTGCG GCCGACGCTG ATGGTGATCG ATCTCGACCG CTTCAAGCAG GTCAACGATT CCGTCGGCAT CGCCGTCGGC GATTCGATCC TGCTGACGCT GGCGCGCCGC CTCACCCGCA TCCTCAAGCC GCAGGACACG CTGGCGCGGA TCGCCGGCGA CCAGTTCGGC CTGATCCTGT TGTCGGAGCA GGACCCGGCC AAGATCACCG CCTTCGCCGA GACCATCCGC AAGACCATCA AGGCGCCGAT CGCCTTCAAC GACCGCGAGA TTTTCCTCAC TGCCTCGATC GGTCTCGCTT TGTCCGACCC GCAGACCCAG CTCTCCGACG AGATCATCAA GGACGCCGAG CTGGCAATGT ATCACTCCAA GCGGATCGGC GGCGACCGCA TCGACGTCTA CAAGCCCGCG ATGCGGGCGC GGAAGTCCGA CCGCCTGACG CTGGAATCCG AACTGCGCCG CGCCATCGAG CGCCAGGAAA TCACCATCCT GTATCAGCCG ATCGTCCGGC TCGAGGACCG TTCGGTCGCG GGCTTCGAGG CGCTGGCGCG GTGGGACCAT CCCAAACTCG GACGGATGGC GCCGGGCGAG TTCATCTCGA TCGCCGAGGA GATCGGCCTG ATCGTCGAAC TCGGCATGTT CGTGATGGAC CAGACCGCCA AGCAGCTCGC GATCTGGCAG CGCGCGATGC GCTCGCGCGA GCCGATCTTC GCCAGCGTCA ACATCTCGTC GCGACAATTG CTGCGCCACG ACCTGATCCA CGACGTCCGC ACCGTGCTGT CGCGCTCCTC GATCGCGCGC GGCACGTTGA AACTCGAACT CACCGAATCG CTGGTGATGG AGAATCCCGA GCACGCCGCG CAAATGCTGA CGCGGATCCG CGAACTCGGC ACCGGCCTGT CGCTCGACGA TTTCGGCACC GGCCATTCGT CGCTGGCCTA TCTGCAACGC TTCCCGTTCG ACACCATCAA GATCGACCAG TCGTTCGTCC GCACCACCAG CCGCGGCACA AGGCCGGTGA TCCTGAAGTC GATCATCGCG CTGGCGCACG ATCTCGGCAT GGACGTGGTC GCGGAGGGCG CCGAGACCGA TTCGGACGCG GTGGAGCTGT ATCAGCTCGG CTGCGAATAC GCCCAGGGCT TCGCCTTCGG CGAGCCGATG GACGCCGACG CCGCGATGCG GCTGCTGACC GAAGAACGCC TCGAAGCCGC GAGCTGA
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Protein sequence | MRLIRCLALL ALGLMLIAVA PQAHALDAVS VRSDAPAIDL TGVLEHQRSD TDRIQVSTAP GNDGIVRRIE VRAREGGQHW VVFALANNTD DQLDRLIVVP HYRMVASGLF WPDLGLSRIA TITPSTGDRP ERQDSTTADI FRVTLDPGSV ITFVAELRTD KLPQLYLWEP EAYKDKVNSF TLYQGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGIDFGF WSKVFDMSAG AERIWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLAFLGSLVA LALFDPAVAS GIARMSLVLI AFAGFTLIVY LSTHGFDRAV LLIPTWFLLV IWVIASGMTV AGSVTNDIVG PALLGGLVLI VMLIGFTVMQ HAFAGSGATG GVVSDVERRA LALIGSGDLI WDWDVSADKV FTSPETEALL GLKRGALEGS AATWLEVLHP LDQDRFRAAL DSVLDQRRGR LTQHFRLRTP DGHFMWFALK ARPVVGADGE VTRVVGTLTD VTEAKNAEER MLHDAVHDNL TGLPNRKLFM DRLGAVANFA KTMPNLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LTRILKPQDT LARIAGDQFG LILLSEQDPA KITAFAETIR KTIKAPIAFN DREIFLTASI GLALSDPQTQ LSDEIIKDAE LAMYHSKRIG GDRIDVYKPA MRARKSDRLT LESELRRAIE RQEITILYQP IVRLEDRSVA GFEALARWDH PKLGRMAPGE FISIAEEIGL IVELGMFVMD QTAKQLAIWQ RAMRSREPIF ASVNISSRQL LRHDLIHDVR TVLSRSSIAR GTLKLELTES LVMENPEHAA QMLTRIRELG TGLSLDDFGT GHSSLAYLQR FPFDTIKIDQ SFVRTTSRGT RPVILKSIIA LAHDLGMDVV AEGAETDSDA VELYQLGCEY AQGFAFGEPM DADAAMRLLT EERLEAAS
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