| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4347 |
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| Symbol | |
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| ID | 4024871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4809546 |
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| End bp | 4812422 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637964556 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_571465 |
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| Protein GI | 91978806 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTCTGA TCAGATGCCT TGCGCTTCTG GCGTTGGGCT TGATGCTGAT TGCGGTTGCC
CCGCAGGCGC ACGCGCTCGA CGCTGTCAGC GTCCGCAGCG ACGCGCCCGC GATCGATCTC
ACCGGCGTAC TCGAGCATCA GCGCAGCGAT ACCGACCGCA TCCAGGTCTC GACCGCGCCC
GGCAATGACG GCATCGTCCG CCGCATCGAG GTGCGCGCCC GCGAGGGCGG CCAGCATTGG
GTAGTGTTCG CGCTCGCCAA CAACACCGAC GATCAGCTCG ACCGCCTGAT CGTCGTGCCG
CATTATCGCA TGGTGGCGTC CGGCCTGTTC TGGCCCGACC TCGGCCTGTC GCGCATCGCG
ACCATCACGC CGTCGACCGG CGACCGCCCG GAGCGGCAGG ACTCGACGAC CGCGGATATC
TTCCGCGTCA CGCTCGATCC CGGCTCGGTG ATCACCTTCG TCGCCGAATT GCGCACCGAC
AAGCTGCCGC AGCTCTATCT GTGGGAGCCG GAAGCCTACA AGGACAAGGT CAATTCGTTC
ACGCTGTACC AGGGCATCGT GATCGGGATT TCCGGCCTGC TGGCGCTGGT GCTGACGATC
CTGTTCGTGG TCAAGGGCAG CATCATGTTC CCCGCCGCCG CGGCGCTGGC CTGGGCGGTG
CTGGTCTATA TCGGCATCGA CTTCGGCTTC TGGAGCAAGG TGTTCGACAT GTCGGCCGGC
GCCGAGCGCA TCTGGCGCGC GTCGGGCGAA GCCATTCTGG CGGCCACGCT GCTGGTGTTC
CTGTTCGCCT ATCTCAATCT CAGCCGCTGG CACGTGCGCT ACTCGCACAT CACGCTCGGC
TGGCTCGCCT TCCTGGGTTC GCTGGTGGCG CTGGCGCTGT TCGATCCGGC GGTGGCGTCC
GGCATCGCGC GGATGTCGCT GGTACTGATC GCCTTCGCCG GCTTCACGCT GATTGTGTAC
CTGTCGACCC ACGGTTTCGA CCGCGCCGTG CTGCTGATCC CGACCTGGTT CCTGCTGGTG
ATCTGGGTGA TCGCCTCGGG CATGACCGTG GCAGGCTCGG TGACCAACGA CATCGTCGGC
CCGGCGCTAC TCGGCGGCCT GGTGCTGATC GTGATGCTGA TCGGCTTCAC GGTGATGCAG
CACGCCTTCG CCGGCAGCGG CGCGACCGGC GGCGTGGTCT CCGACGTCGA GCGACGGGCG
CTGGCGCTGA TCGGCTCCGG CGACCTGATC TGGGACTGGG ACGTCTCCGC CGACAAGGTC
TTCACCAGCC CGGAGACCGA AGCGCTGCTC GGCCTGAAGC GCGGCGCGCT GGAAGGCTCG
GCCGCGACCT GGCTCGAAGT GCTGCACCCG CTCGATCAGG ACCGTTTCCG CGCCGCGCTC
GACTCGGTGC TCGACCAGCG CCGCGGCCGG CTGACCCAGC ATTTCCGGCT GCGCACCCCC
GACGGGCATT TCATGTGGTT CGCCCTGAAG GCGCGGCCGG TGGTCGGCGC CGATGGCGAA
GTGACCCGCG TGGTCGGCAC GCTGACGGAC GTCACCGAAG CCAAGAACGC CGAAGAGCGG
ATGCTGCACG ACGCGGTGCA CGACAATCTC ACCGGCCTGC CGAACCGCAA GCTGTTCATG
GACCGGCTCG GCGCCGTGGC GAATTTCGCC AAGACGATGC CGAACCTGCG GCCGACGCTG
ATGGTGATCG ATCTCGACCG CTTCAAGCAG GTCAACGATT CCGTCGGCAT CGCCGTCGGC
GATTCGATCC TGCTGACGCT GGCGCGCCGC CTCACCCGCA TCCTCAAGCC GCAGGACACG
CTGGCGCGGA TCGCCGGCGA CCAGTTCGGC CTGATCCTGT TGTCGGAGCA GGACCCGGCC
AAGATCACCG CCTTCGCCGA GACCATCCGC AAGACCATCA AGGCGCCGAT CGCCTTCAAC
GACCGCGAGA TTTTCCTCAC TGCCTCGATC GGTCTCGCTT TGTCCGACCC GCAGACCCAG
CTCTCCGACG AGATCATCAA GGACGCCGAG CTGGCAATGT ATCACTCCAA GCGGATCGGC
GGCGACCGCA TCGACGTCTA CAAGCCCGCG ATGCGGGCGC GGAAGTCCGA CCGCCTGACG
CTGGAATCCG AACTGCGCCG CGCCATCGAG CGCCAGGAAA TCACCATCCT GTATCAGCCG
ATCGTCCGGC TCGAGGACCG TTCGGTCGCG GGCTTCGAGG CGCTGGCGCG GTGGGACCAT
CCCAAACTCG GACGGATGGC GCCGGGCGAG TTCATCTCGA TCGCCGAGGA GATCGGCCTG
ATCGTCGAAC TCGGCATGTT CGTGATGGAC CAGACCGCCA AGCAGCTCGC GATCTGGCAG
CGCGCGATGC GCTCGCGCGA GCCGATCTTC GCCAGCGTCA ACATCTCGTC GCGACAATTG
CTGCGCCACG ACCTGATCCA CGACGTCCGC ACCGTGCTGT CGCGCTCCTC GATCGCGCGC
GGCACGTTGA AACTCGAACT CACCGAATCG CTGGTGATGG AGAATCCCGA GCACGCCGCG
CAAATGCTGA CGCGGATCCG CGAACTCGGC ACCGGCCTGT CGCTCGACGA TTTCGGCACC
GGCCATTCGT CGCTGGCCTA TCTGCAACGC TTCCCGTTCG ACACCATCAA GATCGACCAG
TCGTTCGTCC GCACCACCAG CCGCGGCACA AGGCCGGTGA TCCTGAAGTC GATCATCGCG
CTGGCGCACG ATCTCGGCAT GGACGTGGTC GCGGAGGGCG CCGAGACCGA TTCGGACGCG
GTGGAGCTGT ATCAGCTCGG CTGCGAATAC GCCCAGGGCT TCGCCTTCGG CGAGCCGATG
GACGCCGACG CCGCGATGCG GCTGCTGACC GAAGAACGCC TCGAAGCCGC GAGCTGA
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| Protein sequence | MRLIRCLALL ALGLMLIAVA PQAHALDAVS VRSDAPAIDL TGVLEHQRSD TDRIQVSTAP
GNDGIVRRIE VRAREGGQHW VVFALANNTD DQLDRLIVVP HYRMVASGLF WPDLGLSRIA
TITPSTGDRP ERQDSTTADI FRVTLDPGSV ITFVAELRTD KLPQLYLWEP EAYKDKVNSF
TLYQGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGIDFGF WSKVFDMSAG
AERIWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLAFLGSLVA LALFDPAVAS
GIARMSLVLI AFAGFTLIVY LSTHGFDRAV LLIPTWFLLV IWVIASGMTV AGSVTNDIVG
PALLGGLVLI VMLIGFTVMQ HAFAGSGATG GVVSDVERRA LALIGSGDLI WDWDVSADKV
FTSPETEALL GLKRGALEGS AATWLEVLHP LDQDRFRAAL DSVLDQRRGR LTQHFRLRTP
DGHFMWFALK ARPVVGADGE VTRVVGTLTD VTEAKNAEER MLHDAVHDNL TGLPNRKLFM
DRLGAVANFA KTMPNLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LTRILKPQDT
LARIAGDQFG LILLSEQDPA KITAFAETIR KTIKAPIAFN DREIFLTASI GLALSDPQTQ
LSDEIIKDAE LAMYHSKRIG GDRIDVYKPA MRARKSDRLT LESELRRAIE RQEITILYQP
IVRLEDRSVA GFEALARWDH PKLGRMAPGE FISIAEEIGL IVELGMFVMD QTAKQLAIWQ
RAMRSREPIF ASVNISSRQL LRHDLIHDVR TVLSRSSIAR GTLKLELTES LVMENPEHAA
QMLTRIRELG TGLSLDDFGT GHSSLAYLQR FPFDTIKIDQ SFVRTTSRGT RPVILKSIIA
LAHDLGMDVV AEGAETDSDA VELYQLGCEY AQGFAFGEPM DADAAMRLLT EERLEAAS
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