| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4295 |
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| Symbol | |
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| ID | 4024818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4757280 |
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| End bp | 4758446 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637964503 |
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| Product | putative aliphatic amidase expression-regulating protein, AmiC |
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| Protein accession | YP_571413 |
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| Protein GI | 91978754 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0107993 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAGC CGTCGATCCC GGTCGGAATT CTGACGTCGA AATCCGGCCC CTATCAAGCG
ATGGGACGCG AGATTCTCAA ATGCGCGCTG ATGGCGATCG ACGACGTCAA CGACTGCCCG
GATTTCGGCT TCAGATTCAC CCCGCACGTC CGCGATCCCG GCGGCGTCAT CTCGGCGTAT
CACACCGCCT GCGACGACCT GATCCGCAAT GTCCGCGTCG AACACATTAT CGGCTGCTAC
ACCTCGGCCT CGCGCAAGCA GGTGCTGCCG ATCGTCGAGC GCACTGAACG CCTGCTGTGG
TATCCGGCGC GTTACGAAGG CTTCGAATGC TCGGACAATG TGATCTATGT CGGCGCATCG
CCCAACCACA ACGTCGTTCC GCTGATTCGC TATGTGCTCG ACAATCTCTC GCGAGATTTC
TTCTGCGTCG GCTCCAACTA CGTCTGGACC TGGGAGACCA ATCGCGTCAC GCGCGAATTG
GTGACGGCCG CGGAGGGACA CATCGTCGCC GAACGGTTGC TTGAACTCGG CGAAAGCCGG
GTCGATCACA TCGTCGAAGA AATCGTTCGC CGCCAGCCAC CGATCGTTTT CAATACGCTG
GTCGGCAGCT CGAGCTATGA TTTCATCCGC GCATTCCAAT CGGCCACGGC GGCCGCGGGC
CTGAACATCC CGATGCTGAG TTGCAGCCTG TGCGAGCCTG AACTGAGAAT CGTCGGGCCT
GCGGCCGCCG GCTGCATCAC GTCGTCGGCC TATTTCGAGA GCATCCGCCT GCCCGAAAAC
CGCGCTTTCG TCGCGCGGTG GAAAGCGCGT TACGGCAAGG ACAGCAGCCC CTCGGTCGAC
GGCCAATCGG CTTACGTTGC AACCTTTCTG CTGGCGCGTG CGATGCAGCG CGCCGGCACG
TCGAACGTCA ACGAAGTACG CCGCGCCGCG GCGGGTTATC GCTACGATTC GCCTCAAGGG
CCGGTCTGGA TCGACGGCGA CAACAATCAC TGCGTCCTTA CGCCACGGCT CGCCGTCTCC
AATGCTCGGG GACAGTTCGA TATCTTCTGG GAAGCGGAAG CTCCTGTGAA GCCGGACCCT
TATTTGTCGC AACTCGATGT CGCGGTCCGG CCGTCGAGGG ACATACGGTT ACCGAATGCG
TCGCCTCACC TGAGAATCGT CAAATGA
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| Protein sequence | MTKPSIPVGI LTSKSGPYQA MGREILKCAL MAIDDVNDCP DFGFRFTPHV RDPGGVISAY
HTACDDLIRN VRVEHIIGCY TSASRKQVLP IVERTERLLW YPARYEGFEC SDNVIYVGAS
PNHNVVPLIR YVLDNLSRDF FCVGSNYVWT WETNRVTREL VTAAEGHIVA ERLLELGESR
VDHIVEEIVR RQPPIVFNTL VGSSSYDFIR AFQSATAAAG LNIPMLSCSL CEPELRIVGP
AAAGCITSSA YFESIRLPEN RAFVARWKAR YGKDSSPSVD GQSAYVATFL LARAMQRAGT
SNVNEVRRAA AGYRYDSPQG PVWIDGDNNH CVLTPRLAVS NARGQFDIFW EAEAPVKPDP
YLSQLDVAVR PSRDIRLPNA SPHLRIVK
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