Gene RPD_4291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_4291 
Symbol 
ID4024814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4752202 
End bp4753068 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content63% 
IMG OID637964499 
Productinner-membrane translocator 
Protein accessionYP_571409 
Protein GI91978750 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID[TIGR03622] urea ABC transporter, permease protein UrtB 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00956454 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGGCTG AAGTCTTTTC GGTCTTCTAT CAGTTCGCCG ACGTATTCGC TTTTCTGATC 
CTCTCGGCCG CGGGCCTCGC CATCGTGTTC GGCATGATGG GCGTGATCAA CATGGCGCAC
GGCGAGTTCA TCATGTGCGG CGCCTACGTC ACGGTCGGAC TGGTGAATCT CGGCGTGCCG
CTGCCGATCG CGCAGATTCT CGCCGCGATC ACCGCGGGGC TGATCGGCGT CGTCGTCGAA
TATCTGGTCG TGCGACGCTT CTACAAACGC CCGCTGGATT CGCTGCTCGC GACCTGGGGC
TTGAGCCTCA TCGTGACGCA ATCGATGCTG GTGATCGTCG GCTCATCGGT GCGCGGCATC
GGCACGCCCG AAGGCAGCTT CGCGATCGGC GACTATACGT TCTCGACCTA TCGGCTGGTG
CTGTTCGGCG CCGCGGTCGC GGTTCTGGCG GGGTTGTACA TCGTCTTCAT GAAGACGCGG
TTCGGCGTGA TCGCGCGCGC GACGATGCAG AACGCCGCGA TGGCGAAAGC GCTCGGTGCA
CGCACCGGAC GCATCTACGC GATCAGCTTC GGCATCGGCG CCGGCCTCGC CGGATTGTGC
GGCGCGCTTT ACGCGCCGAC GATGACGCTG ATTCCGACGA TGGGCGCGAC CTTCATCGTC
GAGAGTTTCG TCACCGTGGT GATCGGGGGC GCCAATGTTC TGCTCGGTAC CGCGCCCGCC
GCCGTTCTGC TCGCGATGAT CCGGATGGTT CTGAACGCGA GCTACGGGCA GATCATCGGA
CAGATCGGTA TGCTGGTCGC GGTCATTCTG ATCATCCGGG TGCTGCCCGA AGGCCTGTCC
AGTGTGTTCG TCCGTCGTGG GCGTTGA
 
Protein sequence
MSAEVFSVFY QFADVFAFLI LSAAGLAIVF GMMGVINMAH GEFIMCGAYV TVGLVNLGVP 
LPIAQILAAI TAGLIGVVVE YLVVRRFYKR PLDSLLATWG LSLIVTQSML VIVGSSVRGI
GTPEGSFAIG DYTFSTYRLV LFGAAVAVLA GLYIVFMKTR FGVIARATMQ NAAMAKALGA
RTGRIYAISF GIGAGLAGLC GALYAPTMTL IPTMGATFIV ESFVTVVIGG ANVLLGTAPA
AVLLAMIRMV LNASYGQIIG QIGMLVAVIL IIRVLPEGLS SVFVRRGR