Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4291 |
Symbol | |
ID | 4024814 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4752202 |
End bp | 4753068 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637964499 |
Product | inner-membrane translocator |
Protein accession | YP_571409 |
Protein GI | 91978750 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | [TIGR03622] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00956454 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCGGCTG AAGTCTTTTC GGTCTTCTAT CAGTTCGCCG ACGTATTCGC TTTTCTGATC CTCTCGGCCG CGGGCCTCGC CATCGTGTTC GGCATGATGG GCGTGATCAA CATGGCGCAC GGCGAGTTCA TCATGTGCGG CGCCTACGTC ACGGTCGGAC TGGTGAATCT CGGCGTGCCG CTGCCGATCG CGCAGATTCT CGCCGCGATC ACCGCGGGGC TGATCGGCGT CGTCGTCGAA TATCTGGTCG TGCGACGCTT CTACAAACGC CCGCTGGATT CGCTGCTCGC GACCTGGGGC TTGAGCCTCA TCGTGACGCA ATCGATGCTG GTGATCGTCG GCTCATCGGT GCGCGGCATC GGCACGCCCG AAGGCAGCTT CGCGATCGGC GACTATACGT TCTCGACCTA TCGGCTGGTG CTGTTCGGCG CCGCGGTCGC GGTTCTGGCG GGGTTGTACA TCGTCTTCAT GAAGACGCGG TTCGGCGTGA TCGCGCGCGC GACGATGCAG AACGCCGCGA TGGCGAAAGC GCTCGGTGCA CGCACCGGAC GCATCTACGC GATCAGCTTC GGCATCGGCG CCGGCCTCGC CGGATTGTGC GGCGCGCTTT ACGCGCCGAC GATGACGCTG ATTCCGACGA TGGGCGCGAC CTTCATCGTC GAGAGTTTCG TCACCGTGGT GATCGGGGGC GCCAATGTTC TGCTCGGTAC CGCGCCCGCC GCCGTTCTGC TCGCGATGAT CCGGATGGTT CTGAACGCGA GCTACGGGCA GATCATCGGA CAGATCGGTA TGCTGGTCGC GGTCATTCTG ATCATCCGGG TGCTGCCCGA AGGCCTGTCC AGTGTGTTCG TCCGTCGTGG GCGTTGA
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Protein sequence | MSAEVFSVFY QFADVFAFLI LSAAGLAIVF GMMGVINMAH GEFIMCGAYV TVGLVNLGVP LPIAQILAAI TAGLIGVVVE YLVVRRFYKR PLDSLLATWG LSLIVTQSML VIVGSSVRGI GTPEGSFAIG DYTFSTYRLV LFGAAVAVLA GLYIVFMKTR FGVIARATMQ NAAMAKALGA RTGRIYAISF GIGAGLAGLC GALYAPTMTL IPTMGATFIV ESFVTVVIGG ANVLLGTAPA AVLLAMIRMV LNASYGQIIG QIGMLVAVIL IIRVLPEGLS SVFVRRGR
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