| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4225 |
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| Symbol | |
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| ID | 4024746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4690648 |
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| End bp | 4692768 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637964431 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_571343 |
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| Protein GI | 91978684 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.450059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCAGC CAGAAGCCAC GGTCGAACAC GGGCCGGCAC CGGTCAAGGT CGAGTTCGAC
AATTTCGAGC ACGGCTTTCC GGCGGGGTTC GGCCCGCGCG GCTGGAGCCA TCTGGCGTAC
ATGGTGGCGA TCGCGTTCGC GACCTTCCAA CTGGTGATCG CGGCGTGGAA CGTGCTGCCG
AGCCAGGTCG TGCGCGGCGT GCATGTCGGC TTCCTGATCC TGCTCACCTT CGGCCTGCTC
GGCAATTTCA CCGCGCGTAC TGATTTGGGC CGCGTTTTCG CCTGGCTGGT CGGCGCGCTC
GGCTTCCTGT GCGGGCTGTA TCAATGGTTC TTCTACGCCG ACCTGATCGC GCGCGACGGC
GATCCCACCC AGCTTGATCT CGTCGTCGGG ACGCTGCTCG CAGTGCTGAT TTTCGAGGGC
ACGCGGCGGC TGATGGGCTC GGCGCTGCCG ATCATGTGCG GTGTCTGTCT GGTGTACTGG
TTCTTCGGCC AGTATCTGCC GGCGCCATTG AACCACCGCG GCTATGATTT CGACCAGGTC
GTCACCCATC TGTCGTTCGG CACCGAGGGC TTCTATGGTG TGCCGATCTA CGTGTCGGCG
ACCTATATTT TCCTGTTCAT CCTGTTCGGC TCGTTCCTCG AGCGCGCCGG CATGATCCAG
TTGTTCACCG ACGTGTCGCT CGGCCTGTTC GGTCGCAGCC GCGGCGGCCC GGCCAAGGTC
GCGGTGTTCG CCTCGGGCAT GATGGGCACG ATCTCCGGCT CCGGCGTGGC GAATGTCGTC
ACCGTCGGCC AGTTCACCAT TCCGCTGATG ATCAAGTTCG GCTATCGCCG CGCCTTCGCC
GCCGGCGTCG AGGCCACCGC CTCGATGGGC GGGCAGATCA TGCCGCCGGT GATGGGCGCG
GTCGCCTTCA TCATGGCCGA GACGCTCGGC GTCGACTATT CGGTGATCGT CAAGGCCGCG
GTGATCCCGG CATTCCTGTA CTTCGCCTCG GCGTTCTGGA TGGTGCATCT CGAGGCCGGC
AAGCACGGGC TGGTCGGGAT GAAGAAGTCG GAAATCCCGA GCGCCTGGCG GGCGGTGGTC
GATCGCTGGT ACCTTGTCCT GCCGCTCGTC GCGCTGGTGT TCATGCTGTT CGAGGGCTTC
ACGCCGCTCT ATGCCGGCTC GATGGGCCTG GCGCTGACGG TGACGCTGAT CCTCGGCGCC
AGCATCGTGC ACGGCTTCTC CAGCCAGGTG CTGCGCTACG TGTTCTGGAT CGGGCTGGCG
CTTGTGGTCG GCGCAGTGTC GCATAATGGG CTCGACATCA TGCGGATCGT CCTGATCGTC
GCCGCGCTGA TTGCGATCAC GGCGGTCACG CGTGGCGGCC GCGCCACCCT GGCGGCGTGC
CGCGATTCGC TCGCCGACAG CGCCAAATCG GCGCTCACCG TCGGCATGGC CTGCGCCATC
GTCGGCACCA TCATCGGCAT GATGACCCAG ACCGGCGTCG GCACCATTTT CGGCGGCTGG
GTGATCGGGC TCGGCGAGAA GAGCCTGTTC CTGGCGCTGA TCATGACGAT GCTGCTGTCG
ATCCTGCTCG GCACCGGCAT CCCGACGATC CCGACCTACA TCATCACCGC GGCGCTGGCC
GCGCCGGCGC TGGCGAAGCT CGGCGTGCCG CTGATCGTCA GCCACATGTT CGCGTTCTAC
TACGGCATCA TGGCGGACCT GTCGCCGCCG GTCGCCCTGG CGGCGCTGGC GGCGGCGCCG
ATCGCCCGCG AGAATCCCGA CAAGATCGGC TGGGAAGCGA TGCGGATCGC GCTCGCCGGC
TACGTCATCC CGTTCATCGC GGTGTATTCG CCGGCGCTGA TGCTGCAGCC CGGCGATCCG
ATGGCGGCCG AACTCGGCTT CTACGGCGCG GTGGTCTATG CCACCGTGAA GGCGCTGGTC
GCGATCGCGC TGTTCGGCAT GGTCGCGATC GGCTTCCTGT ACACGCGGAT GACGGTGATC
GAGCGCGTCG TCGCCTTCGC CGCCAGCATC TGCCTGCTCG GCGAGTTTCC CTATAGCGAC
TATTTCGGCT TCATCGTCGC GGCGCTGGTC GTGGTGTGGC AATGGCGGCA GCGGCCGCGC
AACGCGATCG CCGCGGCGTG A
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| Protein sequence | MLQPEATVEH GPAPVKVEFD NFEHGFPAGF GPRGWSHLAY MVAIAFATFQ LVIAAWNVLP
SQVVRGVHVG FLILLTFGLL GNFTARTDLG RVFAWLVGAL GFLCGLYQWF FYADLIARDG
DPTQLDLVVG TLLAVLIFEG TRRLMGSALP IMCGVCLVYW FFGQYLPAPL NHRGYDFDQV
VTHLSFGTEG FYGVPIYVSA TYIFLFILFG SFLERAGMIQ LFTDVSLGLF GRSRGGPAKV
AVFASGMMGT ISGSGVANVV TVGQFTIPLM IKFGYRRAFA AGVEATASMG GQIMPPVMGA
VAFIMAETLG VDYSVIVKAA VIPAFLYFAS AFWMVHLEAG KHGLVGMKKS EIPSAWRAVV
DRWYLVLPLV ALVFMLFEGF TPLYAGSMGL ALTVTLILGA SIVHGFSSQV LRYVFWIGLA
LVVGAVSHNG LDIMRIVLIV AALIAITAVT RGGRATLAAC RDSLADSAKS ALTVGMACAI
VGTIIGMMTQ TGVGTIFGGW VIGLGEKSLF LALIMTMLLS ILLGTGIPTI PTYIITAALA
APALAKLGVP LIVSHMFAFY YGIMADLSPP VALAALAAAP IARENPDKIG WEAMRIALAG
YVIPFIAVYS PALMLQPGDP MAAELGFYGA VVYATVKALV AIALFGMVAI GFLYTRMTVI
ERVVAFAASI CLLGEFPYSD YFGFIVAALV VVWQWRQRPR NAIAAA
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