| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4200 |
|---|
| Symbol | |
|---|
| ID | 4024721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4669024 |
|---|
| End bp | 4670025 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637964406 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_571318 |
|---|
| Protein GI | 91978659 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.452782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATGC GTGATTGGAC GATGAGCGGC GCATTGGCCG CGATCCTGCT CGGCGTTTCG
GCGACACAGG CGCCGGCGGA CAGCCTGGCG GTGGCGGCGC GGACCATCGC CGACGAGAAG
GCGGTGTTCG CCACCGTCGA GAGCGTCAGC GTCGTGCCGG CCCGCGCGCG GATCGGCGGT
ACCGTGATCG CGCTGAAGGT GCGCGAAGGC GACAGCGTCA GCCGCGGCCA GGAGATCGCG
ACCATCGGCG ACGACAAGCT GGCGCTGCAG ATGCGCTCGC TCGACGCCCA GATCGAGGCG
CTGCAGGCCC AAGCCGGGCA GGCGCAGATC GACTTCGACC GCATCAACGG CCTGGTCGAA
CGCGGCACGC TGCCGCGCGT CAAGCTCGAC GAGGCCCGCA CCGCGCTCAA CGTCGCCGAG
AACGGGCTGC GCGCCAAGAC CGCGGAGCGC GCGGTGGTGC AGCAGCAGTT CAAGGAAGGC
CAGGTGCTGG CGCCCGATGA CGGACGGGTG CTGAAGAAGA TGGTGACGGT CGGCTCGGTG
GTGTTGCCGG GCGATCCGGT GGTCTCCGTG GCGCAACAGC ACTACAAACT GCGGTTGCGG
GTGCCGGAGC GCCATGCGCG CTTGCTCAAG CAGGGCGACA GGCTGCGGAT CGACGGCGCC
GAGGTCGGCG ACCAGGCGGC GAAGTTCGGC ACCATCGATC TGGTCTATCC GCTGATTGAG
GACGGCCGCG TCGTCGCCGA CGCCACCGTC GAGGGGCTGG GCCAGTATTT CGTCGGCGAC
CGGCTGCGGG TGTGGATCGC CGGCGGCGAA CGTCCCGCCT TCGTCATTCC GTCGCGCTAC
GTCAGGACCG AATTCGGCAT CGACTATGTC CGGCTCGGCG AACCCGGCAA GGCGATCGCG
GTGCCGGTGC AGCGCGGCCG TGAACATCCC TCTCCCGACA TGCCCGATGG CCTCGAAATC
CTGTCGGGCC TGCGCAATGG CGACAGGCTG GTGCAACCGT GA
|
|---|
| Protein sequence | MQMRDWTMSG ALAAILLGVS ATQAPADSLA VAARTIADEK AVFATVESVS VVPARARIGG
TVIALKVREG DSVSRGQEIA TIGDDKLALQ MRSLDAQIEA LQAQAGQAQI DFDRINGLVE
RGTLPRVKLD EARTALNVAE NGLRAKTAER AVVQQQFKEG QVLAPDDGRV LKKMVTVGSV
VLPGDPVVSV AQQHYKLRLR VPERHARLLK QGDRLRIDGA EVGDQAAKFG TIDLVYPLIE
DGRVVADATV EGLGQYFVGD RLRVWIAGGE RPAFVIPSRY VRTEFGIDYV RLGEPGKAIA
VPVQRGREHP SPDMPDGLEI LSGLRNGDRL VQP
|
|---|
| |