| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4189 |
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| Symbol | |
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| ID | 4024710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4657152 |
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| End bp | 4658450 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637964395 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_571307 |
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| Protein GI | 91978648 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.934665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCCTT GCATTTGCGC TATGTTGCGG TGGCTGCTCG GTGTCAGCAT TCTGTCAGGC
GCTGGTGCCT ATCACAGCGT CGGTCGCAAC GGCTGCGGGG GGCCTGCGCG CCATCGACTG
TCAGGTCGGC AAAGACCAGC GAAGTCGCCA AGATCAGCGA AGGCGCCAAG ACCAGCGAAG
TCCAAGAAGC CAATGCTCCG CCAATTAACC ATCACAACCG CATGTCTCGC TGCGCTGCTC
GCCTGCGGCG TCGCGCGCGC GAGCGATGAA CTTGCCATCT CGCAAGTGCA GGCTGAGCGC
GTCGGAATCG AAACCTCGCC GCTGGAGCAG CAGCCGGCCG CGATGGGCCT CAGCTTTCCC
GGCAAGATCA CCGTGCCGCC CGATCGCACC CGGCTGATGA ACGCGCAGCT CGGCGGCCGG
ATCGAGCGCC TGCTGGTCCG CACCGACACC GCGATCAAGG TCGGCGACGT GCTCGCCGAG
CTGCAGAGCC CGGCGCTGGC ACACGCCCAG GCCGAGTATC TCGTCGCCTA CAACAAGGAA
CGGCTGCTGC GCACCAATCT CGACCGCGAG CAGCAGCTCG CTCCCTACGG CGCAGTGCCG
AAGAAGCAGG TCATCATCAC CCAGAACGAA TACGATCAGG CCCGCGCCAC CGTTGCCGAG
CGCCGCCAGG CGCTGTCGCA TGTCGGCATG ACCGAGCCGC AGATCGAGAA GCTGACCACC
AGCCAGGTGC TCGATCCGAA GCTGACGCTG ATCTCGCCGA TCGACGGTGT CGTTCTCGAG
AGCACCACGA TGCCGGGCCA GACCATCGAG GCGCTCGCCC CGGTGTTCAG GCTGGCGCAG
CTCGCGCCGT TGTGGGTGGA AGTGCAGGTC CCTGCGCTGC GCGCCGAGGA TTTTGCGGTC
GGCGCCCGCG TCACGTTGAA CGGCCATGAT TGCGTCGGCC GCGTCGTGTC GATCGGCAGC
AGCGTCGAGG CGACCTCGCA AACCGTGATC GTCCGCGCCG AGTTCGACGA TCCGGACCCT
GATTTGCGGC CCGGCCAGAT GGTCGAGGCG CGGATCGCGC CATCGACCAG CGGCAAGGCC
GAATGGCGGG TGCGCTCCGG CGCCATGGTG CGGCGGGGGA GCGACGCCTT TGTGTTCGTG
CAGACCAGCG GCGGCTTTGT CGCCACCCCG GTGAAGGTGC GCGAGGAACT GCCGCAATTC
GCCGTGGTCA GCGGCAGTTT TCGCGGCGAT GAGCGCATCG CGGTGCGCGG CGTCGCGGCG
CTCAAGGGCG CGTGGCAGGG ACTCGGCGGG GTCGAGTAA
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| Protein sequence | MHPCICAMLR WLLGVSILSG AGAYHSVGRN GCGGPARHRL SGRQRPAKSP RSAKAPRPAK
SKKPMLRQLT ITTACLAALL ACGVARASDE LAISQVQAER VGIETSPLEQ QPAAMGLSFP
GKITVPPDRT RLMNAQLGGR IERLLVRTDT AIKVGDVLAE LQSPALAHAQ AEYLVAYNKE
RLLRTNLDRE QQLAPYGAVP KKQVIITQNE YDQARATVAE RRQALSHVGM TEPQIEKLTT
SQVLDPKLTL ISPIDGVVLE STTMPGQTIE ALAPVFRLAQ LAPLWVEVQV PALRAEDFAV
GARVTLNGHD CVGRVVSIGS SVEATSQTVI VRAEFDDPDP DLRPGQMVEA RIAPSTSGKA
EWRVRSGAMV RRGSDAFVFV QTSGGFVATP VKVREELPQF AVVSGSFRGD ERIAVRGVAA
LKGAWQGLGG VE
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