| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4188 |
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| Symbol | |
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| ID | 4024709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4654071 |
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| End bp | 4657151 |
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| Gene Length | 3081 bp |
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| Protein Length | 1026 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637964394 |
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| Product | heavy metal efflux pump CzcA |
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| Protein accession | YP_571306 |
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| Protein GI | 91978647 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.809737 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGCGC GTCTGGTCGA GTTCTCGCTT GCGCATCGCC TGCTGGTGGT GCTGGCCACC
CTGCTGCTGA TCGGCTCCGG CGTGTACGCC GTGCGCGGAC TGCCGATCGA TGCCTTCCCG
GACGTCTCGC CGGTGCAGGT CAAGATCATC ATGAAGGCGC CGGGCATGAC GCCCGAAGAG
GTCGAGAGCC GGGTGACGAT GCCGCTCGAG CTCGAAATGC TCGGCATCCC CAACAAAACT
ATTCTGCGCT CGACCACCAA ATACGGCCTC GCCGACGTCA CGATCGATTT TTCCGACGGC
GTCGACATTT ATTGGGCGCG CAACCAGGTC GCCGAACGTC TCGCCTCCGC GATGAAGGAC
ATGCCGGACG GGCTGACCGG CGGACTCGCG CCGATCACCA CGCCGCTCGG CGAGATGTTC
ATGTTCACCA TCGAGGGCGG CGACCTGACG CTCGCCGAGC GCCGCACGCT GCTCGACTGG
ACGATCCGGC CGGCGCTGCG CACGCTGCCC GGCGTCGCCG ATGTGAACTC GCTCGGCGGC
TATGTCCGCA GCTTCGAAAT CGTCCCCGAC AATCTGGCGA TGGCCTCGCG CGGGATCTCG
ATCGACGTGC TGGAGAAAGC GATCAAGGCC AACAACCGCA ATGGCGGCGC CGGCCGGCTC
TCCGCCGGCG AAGAGGTGCT GCTGGTGCGC GTCGACGGCC AGATCCGCAC CCTCGACGAT
TTGCGCAACA TCGTGCTCGC CTCGCGTGAC GGCGGCATGG TGCGGGTGCG CGACGTCGCG
CAGGTCCGGA TCGGCAGCAT CACCCGCTCC GGCGCGGTCA CCCGCGACGG CCAGGGTGAG
GCGGTGCAGG GTCTGGTGCT CGGCCTGCGC GGCGCCAATG CCCGCGACGT GGTCGAGGGC
GTCCGCGCCA AGTTCAAGGA GCTCGAGCCG ACGCTGCCGA AGGGCGTGAC GCTCAAAGTG
TTCTACGATC GCGGCGATCT GGTCGGCCGC GCCATCGGCA CGGTGTCGAA GTCGCTGATC
GAAGCCACCG TGCTGGTGAT CGTGCTGCTG ATCCTGTTCC TCGGCGATTG GCGCGCCGCG
CTGGTGGTGG CGCTGACGCT GCCGCTGTCG GCGCTCGCCA CCTTCGTGCT GATGCGCTGG
GCGGGGATGT CAGCCAATCT GATGAGCCTC GGCGGCCTCG CGGTGGCGAT CGGTATGCTG
ATCGATGCCG CGGTGGTGGT GGTCGAGAAC ATCATCTCGC ATCTTGCGCA CGACCGCCAC
GCCGCGCGTG TGCCGCTGCT GCACCGGATC TATCAGGCTT TGCGCGAAGT GGTGGTGCCG
GTCACCTCCG GCATCGTCAT CATCGTCATC GTGTTCCTGC CGCTGCTGAC GCTGCAGGGG
CTCGAAGGCA AGCTGTTCAT CCCGGTGGCG CTGGCGATCG TGTTCGCGCT CGGCTCGTCG
CTGCTGCTGG CGCTGACGGT GATCCCGGTG CTGGCCTCGC TGCTGCTGCG CACCTCCGGG
CATCAAGACA CCTGGCTGGT GCGCAAGATC GGCGCGGCCT ACACGCCGGT GCTGCGCTTC
GCGCTGCGCC GCGAAAAGAC GGTGCTCGCG GTCTCGGTGC TGGCGCTGGT CGCGACCGGG
TTCGCCTACG GCCAGATCGG CAAGATCTTC ATGCCGACGA TGGAGGAGGG CACGCCGATC
GTCAGCGTCG AGAAGCTGCC CTCGATCAGC CTGGAGGAAA GCGTCAATCT CGACCTGAAG
ATTCAGAAGG CGGTGATGGC GGCGGTTCCC GAGGTTCAGA GCATCGTCGC CCGCGTCGGC
TCCGACGAAA TCGGCCTCGA TCCGATGGGC CTCAACCAGA CCGACACTTA CGTGATCCTG
AAGCCGCCGT CGGAATGGCG TAAGCCCGAC GACAAGGAAT GGCTGATGGG CGAGATCCGC
AAGGCGCTCG GGGAATTCCC CGGCATCGGC TTCAGCTTCA CCCAGCCGAT CGAAATGCGC
GTGCAGGAGA TGATCATCGG CGCCCGCGGT GATGTGGTGG CGAAGATCTT CGGCACCGAC
ATCGCCACGC TGAACAGCCT CGCCGAACAG ATCACCGCGA CGTTGAAGAC GCTGAAGGGC
GCCGAGGACG TCCGCACCAC GCTGAACAAG GGCTTCGAGT ATTACAGTGT CAAGATCGAC
CGGCTGCAGG CCGGCCGGCT CGGGCTCGAC GTCGATCAGC TCACCGCGGC GTTGCGGACC
CAGATCGACG GCGAACCCGC CGGCATCGTC GTCGAGGAGG GCCGCCGCAC GCCGATCTCG
ATCCGCGGCC CCGATTCCCT GCGCGAGTCG CCGGCGCGCC TCGCCGGCCT CAGCCTCGTG
CTCGCCGACG GCAAGTCGGT GCCGCTCACC AACGTCGCGC ATCTCGAGCG GATCGACGGC
CCGGTGAAGA TCGATCGTGA AAACGGCCGC CGCCTCGCGC TGGTGATGAG CAACGTCTCG
GGCCGCGATC TGGTCGGCTT CGTCGACGAG GCCAAGCGCG CGGTCGCCGA GCGCGTCAAG
CTGCCGGAAG GCTACAGCAT CGTCTGGGGC GGCCAGTTCG AGAACCAGCA GCGCGCCGCG
GCGCGGCTCG GCATCGTCGT GCCGATCGCG CTGGCGCTGG TGTTTCTGCT GCTGTTCACG
ACCTTCGTGT CGCTGCGCCA ATCGTTGCTG GTCCTGATCA ACATTCCGTT CGCCTTGGTC
GGGGGTGTCT TCAGCCTGCT GATCTCCGGC GAATATCTCT CGGTGCCGGC GTCGGTCGGC
TTCATCGCGC TGCTCGGCAT CGCGGTGCTG AACGGCCTGG TGCTGGTGAC GTATTTCAAC
ACCCTGCGCA ATCAGGGCCT GCCGCCCGAC GAGATCGTGA TGCTCGGCTC GCAGCGGCGG
TTGCGGCCGA TCCTGCTCAC CGCCAGCATC ACCGCGTTCG GCCTGGTGCC GTTGCTCTAC
GCCACCGGGC CCGGCGCCGA CGTGCAGCGG CCGCTGGCGG TGGTGGTGAT CGGCGGACTG
GTCTCATCGA CGCTGCTGAC GCTGGTGATC CTGCCGGTGC TGTATCGCCG CTTCGGCATC
GCCGCGGAGA AAAAGGCATG A
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| Protein sequence | MLARLVEFSL AHRLLVVLAT LLLIGSGVYA VRGLPIDAFP DVSPVQVKII MKAPGMTPEE
VESRVTMPLE LEMLGIPNKT ILRSTTKYGL ADVTIDFSDG VDIYWARNQV AERLASAMKD
MPDGLTGGLA PITTPLGEMF MFTIEGGDLT LAERRTLLDW TIRPALRTLP GVADVNSLGG
YVRSFEIVPD NLAMASRGIS IDVLEKAIKA NNRNGGAGRL SAGEEVLLVR VDGQIRTLDD
LRNIVLASRD GGMVRVRDVA QVRIGSITRS GAVTRDGQGE AVQGLVLGLR GANARDVVEG
VRAKFKELEP TLPKGVTLKV FYDRGDLVGR AIGTVSKSLI EATVLVIVLL ILFLGDWRAA
LVVALTLPLS ALATFVLMRW AGMSANLMSL GGLAVAIGML IDAAVVVVEN IISHLAHDRH
AARVPLLHRI YQALREVVVP VTSGIVIIVI VFLPLLTLQG LEGKLFIPVA LAIVFALGSS
LLLALTVIPV LASLLLRTSG HQDTWLVRKI GAAYTPVLRF ALRREKTVLA VSVLALVATG
FAYGQIGKIF MPTMEEGTPI VSVEKLPSIS LEESVNLDLK IQKAVMAAVP EVQSIVARVG
SDEIGLDPMG LNQTDTYVIL KPPSEWRKPD DKEWLMGEIR KALGEFPGIG FSFTQPIEMR
VQEMIIGARG DVVAKIFGTD IATLNSLAEQ ITATLKTLKG AEDVRTTLNK GFEYYSVKID
RLQAGRLGLD VDQLTAALRT QIDGEPAGIV VEEGRRTPIS IRGPDSLRES PARLAGLSLV
LADGKSVPLT NVAHLERIDG PVKIDRENGR RLALVMSNVS GRDLVGFVDE AKRAVAERVK
LPEGYSIVWG GQFENQQRAA ARLGIVVPIA LALVFLLLFT TFVSLRQSLL VLINIPFALV
GGVFSLLISG EYLSVPASVG FIALLGIAVL NGLVLVTYFN TLRNQGLPPD EIVMLGSQRR
LRPILLTASI TAFGLVPLLY ATGPGADVQR PLAVVVIGGL VSSTLLTLVI LPVLYRRFGI
AAEKKA
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