Gene RPD_4178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_4178 
Symbol 
ID4024699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4647488 
End bp4648462 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content65% 
IMG OID637964384 
Producthypothetical protein 
Protein accessionYP_571296 
Protein GI91978637 
COG category[S] Function unknown 
COG ID[COG2326] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.622827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCGAA AACCCGCCGG CAAGGCGACC AAGACACCGT CCAAACCGAT CCGCAAGACG 
CCCGTCGCGG CCGCGCCGAC GATGCGGCAG CGGATCGAGG CCGAGATGCT CGACGGGTTC
GACGAGGAAC TCGAACTCGA GATCGACGAC GACCGCCTCG ACGCGCTGAC CAATGAGTTC
GCCGGCCACT CGCCCGCCGA CACCGTCGAC CGCCGGATCT ATTTCAAGGA ATTGTTCCGG
CTGCAGGGCG AACTGGTGAA ACTGCAGAGC TGGGTGCAGC ATCAGGGGCT GAAGCTGGTG
GTGGTCTTCG AGGGCCGCGA TTCAGCCGGC AAGGGCGGCG TCATCAAGCG CATCACCCAG
CGGCTCAATC CGCGCATCTG CCGCGTCGCC GCGCTGCCGG CGCCGAGCGA GCGCGAACGC
ACGCAATGGT ACTTCCAACG CTACGTCACG CATCTGCCGG CCGCCGGCGA GATGGTTCTG
TTCGACCGCA GCTGGTACAA CCGCGCCGGC GTCGAGCGGG TGATGGGCTT CTGCAGCGAG
GCCGAGGTCG AGGAGTTCTT CCGCTCCGTC CCCGAATTCG AGCGGATGCT GGTGCGCTCC
GGCATCGTGC TGATCAAATA CTGGTTCTCG ATCACCGACG ACGAGCAACA GCTCCGCTTC
ATGATGCGGA TCAACGATCC GCTCAAGCAG TGGAAGCTGA GCCCGATGGA CGTGCAGTCG
CGGGCGCGCT GGGAGAACTA CACCAAGGCC AAGGAGGAGA TGCTGGAGCG CACCCACATC
GCCGAGGCGC CGTGGCACGT GGTGCAGGCG GTCGACAAGA AGAAGGCGCG GCTGAACTGC
ATCGCGCATC TGTTGGAGCA GATCCCCTAT AAGGAGGTGC CGTCCAAGCG GGTGGTGCTG
CCGCGACGCA TCCACCATCC CGACTATCAC CGCACGCCGG TCCCGGCGGA GATGTATGTG
CCGGAGCGAT ATTGA
 
Protein sequence
MARKPAGKAT KTPSKPIRKT PVAAAPTMRQ RIEAEMLDGF DEELELEIDD DRLDALTNEF 
AGHSPADTVD RRIYFKELFR LQGELVKLQS WVQHQGLKLV VVFEGRDSAG KGGVIKRITQ
RLNPRICRVA ALPAPSERER TQWYFQRYVT HLPAAGEMVL FDRSWYNRAG VERVMGFCSE
AEVEEFFRSV PEFERMLVRS GIVLIKYWFS ITDDEQQLRF MMRINDPLKQ WKLSPMDVQS
RARWENYTKA KEEMLERTHI AEAPWHVVQA VDKKKARLNC IAHLLEQIPY KEVPSKRVVL
PRRIHHPDYH RTPVPAEMYV PERY