| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4160 |
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| Symbol | |
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| ID | 4024682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4627937 |
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| End bp | 4629196 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637964368 |
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| Product | sigma-70 region 2 |
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| Protein accession | YP_571280 |
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| Protein GI | 91978621 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATC TCGCCTGGAT CGAAACCGCG ATCACCGCGG CGCGGCCCCA GGCGATCGGC
GCGTTGCTGC GCTATTTCCG CAACCTCGAC ACCGCCGAGG AGGCGTTTCA GAACGCCTGC
CTGCGCGCGC TGAAGGCGTG GCCGCAGAAC GGCCCGCCGC GCGATCCGGC GGCGTGGCTG
ATCATGGTCG GCCGCAACGT CGCGATCGAC GACATCCGAC GCGGCAGGAA GCTGCAGCCG
CTGCCCGACG ACGACGCGAT CTCCGATCTC GACGACGCCG AGGACGCGCT CGCCGAGCGG
CTCGACGGCT CGCATTATCG CGACGACATC CTGCGGCTGC TGTTCATCTG CTGCCATCCC
GAATTGCCGC CGACCCAGCA GATCGCGCTG GCCCTGCGCA TCGTCAGCGG CCTGACCGTG
GCGCAGATCG CGCGCGCGTT TCTCGTCTCG GATGCTGCGA TGGAGCAGCG CATCACCCGC
GCCAAAGCCA GGGTCGCCCG CGCGAGCGTG CCGTTCGAGA CGCCGGGCGC GCCGGAGCGC
AGTGAACGGC TCGGCGCGGT GGCGGCGATG ATCTACCTGG TGTTCAACGA GGGCTATTCC
GCCTCCGGCG ACACCGCCGG CCTCCGCGCG CCGCTGTGCG AGGAGGCGAT CCGCCTGGCG
CGGCTGCTGC TGCGGCTGTT TCCGTCCGAG CCCGAGATCA TGGGCCTGAC CGCGCTGATG
CTGCTGCAGC ACGCCCGCGC GCCGGCGCGG TTCGATCCGG GCGGCGAGAT CGTGCTGCTC
GACGATCAGG ACCGCAGCCT CTGGAACGCA AAATTCATCG CCGAGGGTCT GGCGCTGATC
GACAAGGCGA TGCGCCATCG CCGCACCGGG GCGTATCAGA TCCAGGCCGC GATCGCCGCG
CTACATGCGC GGGCCGAAAA GCCCGAAGAT ACCGACTGGG CGCAGATCGA TCTGTTGTAC
GGTTCGCTGG AAATCCTGCA GCCGTCGCCG GTGGTGACGC TCAACCGCGC GGTCGCGGTG
TCGAAAGTGC GCGGCGCGGC GGCGGCGCTG TCGATGATCG CGCCGCTGGA GCAGCGGCTG
TCGAACTACT TCCATTATTT CGGCACCAAG GGCGCTCTGC TGCTGCAACA GGGTTGCCGC
GACGAGGCCC GCATCGCGTT CGATCGCGCC ATCGCGCTCG CCCGCACCAC CGCCGAGGCT
TCGCACATCC GGATGCATCT CGATCGGCTG AAGCGCGACA GCGAAGCGAT CGGAACGTGA
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| Protein sequence | MTDLAWIETA ITAARPQAIG ALLRYFRNLD TAEEAFQNAC LRALKAWPQN GPPRDPAAWL
IMVGRNVAID DIRRGRKLQP LPDDDAISDL DDAEDALAER LDGSHYRDDI LRLLFICCHP
ELPPTQQIAL ALRIVSGLTV AQIARAFLVS DAAMEQRITR AKARVARASV PFETPGAPER
SERLGAVAAM IYLVFNEGYS ASGDTAGLRA PLCEEAIRLA RLLLRLFPSE PEIMGLTALM
LLQHARAPAR FDPGGEIVLL DDQDRSLWNA KFIAEGLALI DKAMRHRRTG AYQIQAAIAA
LHARAEKPED TDWAQIDLLY GSLEILQPSP VVTLNRAVAV SKVRGAAAAL SMIAPLEQRL
SNYFHYFGTK GALLLQQGCR DEARIAFDRA IALARTTAEA SHIRMHLDRL KRDSEAIGT
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